Browse Element(s) Details


OsAffx.15715.1.S1_x_at

Description tigr:9634.m03154
TID=OsAffx.15715.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3362011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33570Os.20835.1.S1_at11/116+19543603..19552017Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33570Os.50135.1.S1_at4/116+19543603..19552017Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33580NANA6+19553852..19554763retrotransposon protein, putative, unclassified
LOC_Os06g33590NANA6+19556624..19556833hypothetical protein
LOC_Os06g33600Os.50135.1.S1_at11/116+19559075..19561849Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33610Os.17491.1.S1_at1/116+19563325..19568252Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33620OsAffx.15715.1.S1_x_at11/116+19575635..19576369hypothetical protein
LOC_Os06g33630Os.45974.1.A1_at1/116+19577862..19578161hypothetical protein
LOC_Os06g33640Os.55529.1.S1_at11/116+19582326..19584411CAPIP1, putative, expressed
LOC_Os06g33650OsAffx.27917.1.S1_at10/116+19585428..19588626hypothetical protein
LOC_Os06g33650OsAffx.1755.1.S1_x_at2/116+19585428..19588626hypothetical protein
LOC_Os06g33660OsAffx.27918.2.S1_at10/116+19592749..19594298hypothetical protein
LOC_Os06g33660OsAffx.27918.2.S1_x_at10/116+19592749..19594298hypothetical protein
LOC_Os06g33660OsAffx.27918.1.S1_x_at1/116+19592749..19594298hypothetical protein
LOC_Os06g33669NANA6+19596284..19596641NA
LOC_Os06g33680OsAffx.27919.1.S1_at11/116+19598280..19602399hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15715.1.S1_x_at--512--6191Chr06:19575791..19575815 (25 bp)
GAGGACACCACTCCAGAGAGCTTCG
LOC_Os06g33620
OsAffx.15715.1.S1_x_at--677--1711Chr06:19575797..19575821 (25 bp)
ACCACTCCAGAGAGCTTCGGGCGAG
LOC_Os06g33620
OsAffx.15715.1.S1_x_at--968--1932Chr12:16926483..16926507 (25 bp)
ACGGCACGGCCGACCGATGCTCAGG
NONE
OsAffx.15715.1.S1_x_at--4--6191Chr06:19575955..19575979 (25 bp)
GAGGACGCACTTCCAGCGGTCACCG
LOC_Os06g33620
OsAffx.15715.1.S1_x_at--997--8091Chr06:19576038..19576062 (25 bp)
GGCACGGTCTACCGGTGCACGGGCG
LOC_Os06g33620
OsAffx.15715.1.S1_x_at--443--4671Chr06:19576195..19576219 (25 bp)
GCGGAAAACTCGGCCGACGGCCATG
LOC_Os06g33620
OsAffx.15715.1.S1_x_at--1135--5131Chr06:19576233..19576257 (25 bp)
GAAGGCGCGGCCGTTCTGGACGGTT
LOC_Os06g33620
OsAffx.15715.1.S1_x_at--562--4231Chr06:19576243..19576267 (25 bp)
CCGTTCTGGACGGTTGAGAGCACGA
LOC_Os06g33620
OsAffx.15715.1.S1_x_at--221--5991Chr06:19576258..19576282 (25 bp)
GAGAGCACGAATCAAGAGGGAAATA
LOC_Os06g33620
OsAffx.15715.1.S1_x_at--753--5931Chr06:19576260..19576284 (25 bp)
GAGCACGAATCAAGAGGGAAATAAA
LOC_Os06g33620
OsAffx.15715.1.S1_x_at--323--6551Chr06:19576299..19576323 (25 bp)
GATTAAAAGACCCCAATCAATTTTG
LOC_Os06g33620
Target Sequence 
GAGGACACCACTCCAGAGAGCTTCGGGCGAGGAGATGGTGAGGCTGGGGAGGAGGACGACGCCGCGGAGCTGAGGGAGGC
GACGGCACGGCCGACCGATGCTCAGGCGCGGCAGCAGAGGCGGCTGGTGGCGGTGCAGTGGCGGCAACGCCACTGGACGT
CGACGAGGACGCACTTCCAGCGGTCACCGCGCGAAACAGAGGGCAGGCTGGGGGAGAGGAGGCGGCTGCGACGCCGAGGA
TGGCGACGGCACGGTCTACCGGTGCACGGGCGAGGAGGGGGAGGCGGCTGGAGGTGCGGCCACGGGGAGACGCGGGAGGA
GGCTAAAACGAGAGAACGGAGGAAGAGGATTCCATTTTATAGGCGTGGGGAGGGAGCCGGCCACGGGAGGAGCGGGGAAC
GGCGGCGGAAAACTCGGCCGACGGCCATGGAAAGCGGCTGGGGAAGGCGCGGCCGTTCTGGACGGTTGAGAGCACGAATC
AAGAGGGAAATAAAGAGGAAGGAAAGGGGATTAAAAGACCCCAATCAATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15715.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis