Browse Element(s) Details


OsAffx.15744.1.S1_at

Description tigr:9634.m03280
TID=OsAffx.15744.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3472011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34670OsAffx.31347.1.S1_at10/116+20148014..20149254hypothetical protein
LOC_Os06g34680NANA6+20149649..20150755transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34690Os.12204.1.S1_at11/116+20157644..20164610T-complex protein 1, gamma subunit, putative, expressed
LOC_Os06g34700OsAffx.5008.1.S1_at10/116+20165748..20167757hypothetical protein
LOC_Os06g34710OsAffx.15743.1.S1_at11/116+20168369..20171314expressed protein
LOC_Os06g34720OsAffx.15744.1.S1_at11/116+20173436..20174355hypothetical protein
LOC_Os06g34730Os.20169.1.S1_at11/116+20177127..20178046expressed protein
LOC_Os06g34740OsAffx.5009.1.S1_at11/116+20190208..20191869NA
LOC_Os06g34750NANA6+20194559..20194865hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15744.1.S1_at--864--7651Chr06:20174279..20174303 (25 bp)
GGGATGAAGCTCAGGCTAGAACCAA
LOC_Os06g34720
OsAffx.15744.1.S1_at--38--10851Chr06:20174234..20174258 (25 bp)
TTGGGAGGCTCAAGCTGACAGAACT
LOC_Os06g34720
OsAffx.15744.1.S1_at--922--2391Chr06:20174204..20174228 (25 bp)
AAACATTAACAGGTCAGCCATTTGA
LOC_Os06g34720
OsAffx.15744.1.S1_at--311--7111Chr06:20174000..20174216 (25 bp)
GTCAGCCATTTGAAGGGCACTCCAA
LOC_Os06g34720
OsAffx.15744.1.S1_at--515--1072Chr07:2160791..2160895 (25 bp)
AGGGCACTCCAAAATTGTGGGATTT
NONE
OsAffx.15744.1.S1_at--664--8631Chr06:20173970..20173994 (25 bp)
TGGGATTTGCTACAAGACATTCCAA
LOC_Os06g34720
OsAffx.15744.1.S1_at--148--3591Chr06:20173953..20173977 (25 bp)
CATTCCAAAATTGTGTTACTTGCTG
LOC_Os06g34720
OsAffx.15744.1.S1_at--676--6771Chr06:20173939..20173963 (25 bp)
GTTACTTGCTGATGGACTCTGCGAG
LOC_Os06g34720
OsAffx.15744.1.S1_at--149--8531Chr06:20173927..20173951 (25 bp)
TGGACTCTGCGAGCATCATTATATT
LOC_Os06g34720
OsAffx.15744.1.S1_at--562--9591Chr06:20173912..20173936 (25 bp)
TCATTATATTATTTCCACCCAAGTG
LOC_Os06g34720
OsAffx.15744.1.S1_at--673--151Chr06:20173905..20173929 (25 bp)
ATTATTTCCACCCAAGTGAAGAAAG
LOC_Os06g34720
Target Sequence 
GGGATGAAGCTCAGGCTAGAACCAAGAAAGGTGAGTGCGGAACGGTTGGGAGGCTCAAGCTGACAGAACTAGTAAAAACA
TTAACAGGTCAGCCATTTGAAGGGCACTCCAAAATTGTGGGATTTGCTACAAGACATTCCAAAATTGTGTTACTTGCTGA
TGGACTCTGCGAGCATCATTATATTATTTCCACCCAAGTGAAGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15744.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis