Browse Element(s) Details


OsAffx.15823.1.S1_at

Description tigr:9634.m03687
TID=OsAffx.15823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3867010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38629NANA6+22935861..22936325NA
LOC_Os06g38640OsAffx.27992.1.S1_at11/116+22937993..22939810Leucine Rich Repeat family protein
LOC_Os06g38650OsAffx.5048.1.S1_at11/116+22950399..22953848Leucine Rich Repeat family protein, expressed
LOC_Os06g38660OsAffx.5049.1.S1_s_at11/116+22955672..22956310expressed protein
LOC_Os06g38660Os.7966.1.S1_at11/116+22955672..22956310expressed protein
LOC_Os06g38670OsAffx.15823.1.S1_at10/116+22957564..22965353Leucine Rich Repeat family protein, expressed
LOC_Os06g38680Os.49927.1.S1_at11/116+22966819..22970854expressed protein
LOC_Os06g38700NANA6+22978951..22981668transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38710OsAffx.27993.1.S1_at11/116+22982848..22983680hypothetical protein
LOC_Os06g38720OsAffx.15824.1.S1_at11/116+22987756..22988115hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15823.1.S1_at--861--5971Chr06:22961750..22961774 (25 bp)
GAGAAAATGGACTTGGGCCGGCCTC
LOC_Os06g38670
OsAffx.15823.1.S1_at--323--3771Chr06:22961783..22962039 (25 bp)
CTCTCTGGGCCCATGTAGGCAAAGA
LOC_Os06g38670
OsAffx.15823.1.S1_at--655--6011Chr06:22962071..22962095 (25 bp)
GAGAGAATTCAGTCCCACAACTTCG
LOC_Os06g38670
OsAffx.15823.1.S1_at--17--9651Chr06:22962079..22962103 (25 bp)
TCAGTCCCACAACTTCGATTTCATG
LOC_Os06g38670
OsAffx.15823.1.S1_at--777--10011Chr06:22962108..22962132 (25 bp)
TAGCATGCTACGAAGGAGTTTTCAA
LOC_Os06g38670
OsAffx.15823.1.S1_at--216--6271Chr06:22962251..22962592 (25 bp)
GATGTAACCGTGACGGTTCTCCCAG
LOC_Os06g38670
OsAffx.15823.1.S1_at--821--8752Chr06:22967117..22967141 (25 bp)
TGTAGTCTCTCAGGGATGATTCTTC
NONE
OsAffx.15823.1.S1_at--408--10532Chr06:22967139..22967158 (20 bp)
TTCAGATACTCAGGAAGCCGAAGCT
NONE
OsAffx.15823.1.S1_at--163--1651Chr06:22964351..22964371 (21 bp)
AGCCGAAGCTTAGTTTTGGGTCAGA
LOC_Os06g38670
OsAffx.15823.1.S1_at--6--7831Chr06:22964365..22964389 (25 bp)
GGTCAGATTGCAAAACCTCGGGCAT
LOC_Os06g38670
OsAffx.15823.1.S1_at--650--10451NONE
TTAGCCCAATGGAAGCAGCAGCAAG
NONE
Target Sequence 
GAGAAAATGGACTTGGGCCGGCCTCTCGTGGACCTCTCTGGGCCCATGTAGGCAAAGAAGGAAAAAAGAAACGCAGCGTA
CATACATGTGAGAGAATTCAGTCCCACAACTTCGATTTCATGAAAATAGCATGCTACGAAGGAGTTTTCAAAAGTTACAT
ACAAGTTACATTATTGTACCATAATTACATTTATCAAATTAAGAAAATTTGTCAACAAATAGATGTAACCGTGACGGTTC
TCCCAGCACGTCCCTGTAGTCTCTCAGGGATGATTCTTCAGATACTCAGGAAGCCGAAGCTTAGTTTTGGGTCAGATTGC
AAAACCTCGGGCATGAACAAAATTAGCCCAATGGAAGCAGCAGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis