Browse Element(s) Details


OsAffx.15848.1.S1_at

Description tigr:9634.m03815
TID=OsAffx.15848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3983011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39790OsAffx.23796.1.S1_at1/116+23638497..23642513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39800OsAffx.28012.1.S1_at11/116+23648636..23648980hypothetical protein
LOC_Os06g39810OsAffx.5064.1.S1_at11/116+23652854..23653306hypothetical protein
LOC_Os06g39820OsAffx.28013.1.S1_at11/116+23655251..23659992retrotransposon protein, putative, unclassified, expressed
LOC_Os06g39830OsAffx.15848.1.S1_at11/116+23661021..23661751hypothetical protein
LOC_Os06g39840NANA6+23662171..23667724retrotransposon protein, putative, unclassified
LOC_Os06g39850NANA6+23669091..23669847hypothetical protein
LOC_Os06g39860OsAffx.28014.1.S1_at11/116+23673240..23673617hypothetical protein
LOC_Os06g39870Os.5316.1.S1_at10/116+23684182..2368726326S protease regulatory subunit 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15848.1.S1_at--1020--1311Chr06:23661125..23661149 (25 bp)
AGAGGCGCTGCGTCTGTACTACAAG
LOC_Os06g39830
OsAffx.15848.1.S1_at--1068--7171Chr06:23661136..23661159 (24 bp)
GTCTGTACTACAAGCGGCGCATCCT
LOC_Os06g39830
OsAffx.15848.1.S1_at--611--9851Chr06:23661144..23661380 (25 bp)
TACAAGCGGCGCATCCTTAGGATGT
LOC_Os06g39830
OsAffx.15848.1.S1_at--61--3531Chr06:23661372..23661391 (20 bp)
CATCCTTAGGATGTTGCGGGAAGAG
LOC_Os06g39830
OsAffx.15848.1.S1_at--340--6671Chr06:23661391..23661415 (25 bp)
GTTGCAGCTGCTTCAAGACGTTTCA
LOC_Os06g39830
OsAffx.15848.1.S1_at--107--4771Chr06:23661397..23661421 (25 bp)
GCTGCTTCAAGACGTTTCAGATGAT
LOC_Os06g39830
OsAffx.15848.1.S1_at--195--711Chr06:23661420..23661444 (25 bp)
ATGATGGCTTTTTCAAGGTTATTGC
LOC_Os06g39830
OsAffx.15848.1.S1_at--408--7871Chr06:23661436..23661460 (25 bp)
GGTTATTGCCAAGTTCAACGTTCCA
LOC_Os06g39830
OsAffx.15848.1.S1_at--1081--71Chr06:23661440..23661464 (25 bp)
ATTGCCAAGTTCAACGTTCCACTGA
LOC_Os06g39830
OsAffx.15848.1.S1_at--316--1891Chr06:23661453..23661632 (25 bp)
ACGTTCCACTGAAGAATCTGTGCTT
LOC_Os06g39830
OsAffx.15848.1.S1_at--905--5251Chr06:23661621..23661645 (25 bp)
GAATCTGTGCTTTCTTTCGGCATCA
LOC_Os06g39830
Target Sequence 
AGAGGCGCTGCGTCTGTACTACAAGCGGCGCATCCTTAGGATGTTGCGGGAAGAGTTGCAGCTGCTTCAAGACGTTTCAG
ATGATGATGGCTTTTTCAAGGTTATTGCCAAGTTCAACGTTCCACTGAAGAATCTGTGCTTTCTTTCGGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis