Browse Element(s) Details


OsAffx.15876.1.A1_at

Description tigr:9634.m03986
TID=OsAffx.15876.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g414109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41370NANA6+24795550..24798356hypothetical protein
LOC_Os06g41380Os.57073.1.S1_at11/116+24804549..24807592expressed protein
LOC_Os06g41390Os.5942.1.S1_at11/116+24807830..24816725Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41390Os.49688.1.S1_at9/116+24807830..24816725Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g41410Os.35458.1.S1_at11/116+24818856..24829136expressed protein
LOC_Os06g41410OsAffx.15876.1.A1_at9/116+24818856..24829136expressed protein
LOC_Os06g41410Os.36709.1.S1_x_at3/116+24818856..24829136expressed protein
LOC_Os06g41410Os.8753.4.S1_x_at1/116+24818856..24829136expressed protein
LOC_Os06g41410Os.6763.1.S1_x_at1/116+24818856..24829136expressed protein
LOC_Os06g41410OsAffx.5273.1.S1_at1/116+24818856..24829136expressed protein
LOC_Os06g41440Os.5275.1.S1_at10/116+24830707..24838945legume lectins beta domain PF|00139 containing protein, putative, expressed
LOC_Os06g41450Os.27788.1.S1_at11/116+24842687..24843763VQ motif family protein, expressed
LOC_Os06g41460Os.10827.1.S1_x_at11/116+24849445..24852357transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41460Os.46055.2.S1_x_at6/116+24849445..24852357transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15876.1.A1_at--630--9291Chr06:24818846..24818870 (25 bp)
TCCCTCGCGTAAAATCCAGTCCCCT
NONE
OsAffx.15876.1.A1_at--797--4631Chr06:24818852..24818876 (25 bp)
GCGTAAAATCCAGTCCCCTCCCTGG
NONE
OsAffx.15876.1.A1_at--1060--3751Chr06:24818869..24818893 (25 bp)
CTCCCTGGAGTTTCCAAACAAGCCG
LOC_Os06g41410
OsAffx.15876.1.A1_at--155--8391Chr06:24818870..24818894 (25 bp)
TCCCTGGAGTTTCCAAACAAGCCGC
LOC_Os06g41410
OsAffx.15876.1.A1_at--847--3731Chr06:24818872..24818896 (25 bp)
CCTGGAGTTTCCAAACAAGCCGCGA
LOC_Os06g41410
OsAffx.15876.1.A1_at--706--3891Chr06:24818873..24818897 (25 bp)
CTGGAGTTTCCAAACAAGCCGCGAG
LOC_Os06g41410
OsAffx.15876.1.A1_at--744--8551Chr06:24818874..24818898 (25 bp)
TGGAGTTTCCAAACAAGCCGCGAGA
LOC_Os06g41410
OsAffx.15876.1.A1_at--385--7971Chr06:24818875..24818899 (25 bp)
GGAGTTTCCAAACAAGCCGCGAGAG
LOC_Os06g41410
OsAffx.15876.1.A1_at--729--6071Chr06:24818876..24818900 (25 bp)
GAGTTTCCAAACAAGCCGCGAGAGG
LOC_Os06g41410
OsAffx.15876.1.A1_at--28--1211Chr06:24818877..24818901 (25 bp)
AGTTTCCAAACAAGCCGCGAGAGGA
LOC_Os06g41410
OsAffx.15876.1.A1_at--983--6831Chr06:24818878..24818902 (25 bp)
GTTTCCAAACAAGCCGCGAGAGGAG
LOC_Os06g41410
Target Sequence 
TCCCTCGCGTAAAATCCAGTCCCCTCCCTGGAGTTTCCAAACAAGCCGCGAGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15876.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis