Browse Element(s) Details


OsAffx.15900.1.S1_at

Description tigr:9634.m04148
TID=OsAffx.15900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Nicotiana EREBP-3 like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4299011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42940OsAffx.18229.1.S1_x_at1/116+25799398..25801231retrotransposon protein, putative, unclassified
LOC_Os06g42950NANA6+25804943..25805639retrotransposon protein, putative, unclassified
LOC_Os06g42960NANA6+25807142..25808545retrotransposon protein, putative, unclassified
LOC_Os06g42970Os.28943.1.S1_x_at1/116+25815263..25816840retrotransposon protein, putative, unclassified
LOC_Os06g42980NANA6+25817483..25823638retrotransposon protein, putative, unclassified
LOC_Os06g42990OsAffx.15900.1.S1_at11/116+25825906..25827084AP2 domain containing protein
LOC_Os06g43000OsAffx.15901.1.S1_at11/116+25831462..25836179hypothetical protein
LOC_Os06g43010NANA6+25851027..25851320hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0008219biological_processcell death
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009723biological_processresponse to ethylene stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009864biological_processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15900.1.S1_at--648--8391Chr06:25826616..25826640 (25 bp)
GGCGCTGGTTCCTGAGCCCGAGCTA
LOC_Os06g42990
OsAffx.15900.1.S1_at--345--3791Chr06:25826627..25826651 (25 bp)
CTGAGCCCGAGCTACAAGTTCAAGG
LOC_Os06g42990
OsAffx.15900.1.S1_at--58--7511Chr06:25826740..25826764 (25 bp)
GTGGTCGCCGAGGATTCTCCGATGC
LOC_Os06g42990
OsAffx.15900.1.S1_at--134--6171Chr06:25826749..25826773 (25 bp)
GAGGATTCTCCGATGCTGCAGGCGA
LOC_Os06g42990
OsAffx.15900.1.S1_at--192--631Chr06:25826761..25826785 (25 bp)
ATGCTGCAGGCGACTACACCCGCTG
LOC_Os06g42990
OsAffx.15900.1.S1_at--1046--2651Chr06:25826831..25826855 (25 bp)
AAGCCATCTTCCAGCCGATGATCAT
LOC_Os06g42990
OsAffx.15900.1.S1_at--250--8871Chr06:25826883..25826907 (25 bp)
TGATGACTTCCTGCTGTCGGCCATC
LOC_Os06g42990
OsAffx.15900.1.S1_at--961--2211Chr06:25826933..25826957 (25 bp)
ACAAGAAGCCGAAGCTCCTCGGTGT
LOC_Os06g42990
OsAffx.15900.1.S1_at--173--2671Chr06:25826938..25826962 (25 bp)
AAGCCGAAGCTCCTCGGTGTCTACA
LOC_Os06g42990
OsAffx.15900.1.S1_at--1042--7111Chr06:25826989..25827013 (25 bp)
GTCATGGAGTTCTTCGCGGATCTCG
LOC_Os06g42990
OsAffx.15900.1.S1_at--214--1231Chr06:25826996..25827020 (25 bp)
AGTTCTTCGCGGATCTCGGCGACGG
LOC_Os06g42990
Target Sequence 
GGCGCTGGTTCCTGAGCCCGAGCTACAAGTTCAAGGCGGCCGTGGAGAGCGCGGGCGCGGGCGTGGACGTGGACGCGGTG
GCGGTCGCGGCGGCCGCCGCGGCCGCGGGCGCACGCCGGCGAGGGTGGTCGCCGAGGATTCTCCGATGCTGCAGGCGACT
ACACCCGCTGCAGCTCCGGCGCCGGCACCGGCGCTGGCACCTGCACCGGCCAATCAAGCCATCTTCCAGCCGATGATCAT
CCCTCCCGGCGGCGTCGTGGTGGCTCCTGATGACTTCCTGCTGTCGGCCATCTCCGACGACGAGCCCGTGCTGCCGCACA
AGAAGCCGAAGCTCCTCGGTGTCTACACCCCGCCGGACAGCCCTGATCAGTTCGTCATGGAGTTCTTCGCGGATCTCGGC
GACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis