Browse Element(s) Details


OsAffx.15901.1.S1_at

Description tigr:9634.m04149
TID=OsAffx.15901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4300011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42960NANA6+25807142..25808545retrotransposon protein, putative, unclassified
LOC_Os06g42970Os.28943.1.S1_x_at1/116+25815263..25816840retrotransposon protein, putative, unclassified
LOC_Os06g42980NANA6+25817483..25823638retrotransposon protein, putative, unclassified
LOC_Os06g42990OsAffx.15900.1.S1_at11/116+25825906..25827084AP2 domain containing protein
LOC_Os06g43000OsAffx.15901.1.S1_at11/116+25831462..25836179hypothetical protein
LOC_Os06g43010NANA6+25851027..25851320hypothetical protein
LOC_Os06g43020OsAffx.15902.1.S1_at10/116+25856439..25862971expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15901.1.S1_at--818--1491Chr06:25834461..25834485 (25 bp)
AGCACAACATATACGGCCGCCAGAG
LOC_Os06g43000
OsAffx.15901.1.S1_at--823--731Chr06:25834559..25834583 (25 bp)
ATGTTCGACAACGTGAAGCGGAGCC
LOC_Os06g43000
OsAffx.15901.1.S1_at--1005--6451Chr06:25834642..25834666 (25 bp)
GATAAGCGCCGCCAACATGAGGCAC
LOC_Os06g43000
OsAffx.15901.1.S1_at--1147--2491Chr06:25834655..25834679 (25 bp)
AACATGAGGCACTCTCGGGATCACT
LOC_Os06g43000
OsAffx.15901.1.S1_at--634--2791Chr06:25835609..25835632 (24 bp)
AAGATGTTCGGGTGCTTCCAACCAA
LOC_Os06g43000
OsAffx.15901.1.S1_at--585--2571Chr06:25835652..25835676 (25 bp)
AACGGCGATGTTTCTCTGATCCGAT
LOC_Os06g43000
OsAffx.15901.1.S1_at--928--6371Chr06:25835669..25835693 (25 bp)
GATCCGATCCTGTACATGTATCAAC
LOC_Os06g43000
OsAffx.15901.1.S1_at--954--6891Chr06:25835686..25836052 (25 bp)
GTATCAACTTTTCACTTGTGTCTCT
LOC_Os06g43000
OsAffx.15901.1.S1_at--551--7451Chr06:25836045..25836069 (25 bp)
GTGTCTCTTCTCCTTTTGGTGAAGA
LOC_Os06g43000
OsAffx.15901.1.S1_at--166--5571Chr06:25836068..25836092 (25 bp)
GAAAGAGATAGAAGTCACCCAGTCC
LOC_Os06g43000
OsAffx.15901.1.S1_at--835--6971Chr06:25836120..25836144 (25 bp)
GTACCACCCTTGCTGGGCTATATAT
LOC_Os06g43000
Target Sequence 
AGCACAACATATACGGCCGCCAGAGGGCATCGGCGGTGCCCAAGTTCGGGGTGTGGGACGAGCAGAACGGCGAGGCGGCG
GCGCAGGGGTTCACGGTGATGTTCGACAACGTGAAGCGGAGCCGAGCCGCGGCCCGGGGCGCCGGCGCGGCCGGCGTCGT
CCCGCGCTCGCCGCCGCAGGAGATAAGCGCCGCCAACATGAGGCACTCTCGGGATCACTCCCTCATGTCCAAGATGTTCG
GGTGCTTCCAACCAACCACAAGAGAATGAGGACGAACGGCGATGTTTCTCTGATCCGATCCTGTACATGTATCAACTTTT
CACTTGTGTCTCTTCTCCTTTTGGTGAAGAAAGAGATAGAAGTCACCCAGTCCATGGTCACCAACGCAGCAGCAGCCTGC
GTACCACCCTTGCTGGGCTATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis