Browse Element(s) Details


OsAffx.15919.1.S1_x_at

Description tigr:9634.m04266
TID=OsAffx.15919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=acetyltransferase, GNAT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4410011/11acetyltransferase, GNAT family protein
LOC_Os02g084001/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44050Os.27118.1.A1_at11/116+26568423..26571448Methyladenine glycosylase family protein, expressed
LOC_Os06g44060Os.6185.1.S1_at11/116+26574131..26578687Phospholipase D. Active site motif family protein, expressed
LOC_Os06g44070NANA6+26580705..26582751retrotransposon, putative, centromere-specific
LOC_Os06g44080Os.20327.1.S1_at11/116+26584563..26587133ubiquitin family protein, putative, expressed
LOC_Os06g44080OsAffx.28094.1.S1_at4/116+26584563..26587133ubiquitin family protein, putative, expressed
LOC_Os06g44090OsAffx.15918.1.S1_at11/116+26588785..26589682hypothetical protein
LOC_Os06g44100OsAffx.15919.1.S1_x_at11/116+26590908..26592467acetyltransferase, GNAT family protein
LOC_Os06g44100OsAffx.11941.1.S1_x_at2/116+26590908..26592467acetyltransferase, GNAT family protein
LOC_Os06g44110OsAffx.5770.1.S1_at1/116+26594256..26595141retrotransposon protein, putative, unclassified
LOC_Os06g44120NANA6+26606364..26606890retrotransposon protein, putative, unclassified
LOC_Os06g44130NANA6+26607733..26609425retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009640biological_processphotomorphogenesis
GO:0009723biological_processresponse to ethylene stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15919.1.S1_x_at--69--5751Chr06:26591354..26591378 (25 bp)
GACGGCGCGTCGTTCGCCGTGCTCA
LOC_Os06g44100
OsAffx.15919.1.S1_x_at--284--10651Chr06:26591342..26591366 (25 bp)
TTCGCCGTGCTCAGCGTCTGGGACT
LOC_Os06g44100
OsAffx.15919.1.S1_x_at--945--9451Chr06:26591326..26591350 (25 bp)
TCTGGGACTCCACACGCTCGCTCAG
LOC_Os06g44100
OsAffx.15919.1.S1_x_at--3--2751Chr06:26591090..26591114 (25 bp)
AAGAACCCGGCGTGCGCCGTCGTCG
LOC_Os06g44100
OsAffx.15919.1.S1_x_at--222--8411Chr06:26591017..26591041 (25 bp)
GGCGCCGCTTCTGCTGCGACGAGGA
LOC_Os06g44100
OsAffx.15919.1.S1_x_at--986--5772Chr02:4483330..4483354 (25 bp)
GACGAGGACGTCTGGTGCATCAAGA
LOC_Os02g08400
OsAffx.15919.1.S1_x_at--476--1871Chr06:26590993..26591017 (25 bp)
ACGTCTGGTGCATCAAGAACCTCAA
LOC_Os06g44100
OsAffx.15919.1.S1_x_at--540--8611Chr06:26590988..26591012 (25 bp)
TGGTGCATCAAGAACCTCAACCCGG
LOC_Os06g44100
OsAffx.15919.1.S1_x_at--976--9691Chr06:26590981..26591005 (25 bp)
TCAAGAACCTCAACCCGGACGAACA
LOC_Os06g44100
OsAffx.15919.1.S1_x_at--145--3851Chr06:26590966..26590990 (25 bp)
CGGACGAACACGACGCCGACGACTG
LOC_Os06g44100
OsAffx.15919.1.S1_x_at--943--2471Chr06:26590960..26590984 (25 bp)
AACACGACGCCGACGACTGGGCGGC
LOC_Os06g44100
Target Sequence 
GACGGCGCGTCGTTCGCCGTGCTCAGCGTCTGGGACTCCACACGCTCGCTCAGCCTCCGCGTGAGCGGCGCCCCGGCGCT
GCTCCGCGCGTCGCTCGCCGCGCTCCGGGCGCTCGACCGCGGTGCGCCGTGGCTGCACCTCCCCTCCATCCCGGACATCT
TCCGCCCCTTCGGCGCCTACCTCCTCTACGGCCTCCGCATGTCCGGCCCGGACGGCCCGGCGCTGCTCCGGTCGCTCTGC
CACCACGCCCACAACGTCGCCCGCAAGAACCCGGCGTGCGCCGTCGTCGCCGCCGACATCTCCCCCGACGACCCGGCCGC
CGCCGCCGTCCCGCGGTGGCGCCGCTTCTGCTGCGACGAGGACGTCTGGTGCATCAAGAACCTCAACCCGGACGAACACG
ACGCCGACGACTGGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15919.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis