Browse Element(s) Details


OsAffx.15918.1.S1_at

Description tigr:9634.m04265
TID=OsAffx.15918.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4409011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44040OsAffx.28093.1.S1_at11/116+26562337..26565281DOMON domain containing protein, expressed
LOC_Os06g44050Os.27118.1.A1_at11/116+26568423..26571448Methyladenine glycosylase family protein, expressed
LOC_Os06g44060Os.6185.1.S1_at11/116+26574131..26578687Phospholipase D. Active site motif family protein, expressed
LOC_Os06g44070NANA6+26580705..26582751retrotransposon, putative, centromere-specific
LOC_Os06g44080Os.20327.1.S1_at11/116+26584563..26587133ubiquitin family protein, putative, expressed
LOC_Os06g44080OsAffx.28094.1.S1_at4/116+26584563..26587133ubiquitin family protein, putative, expressed
LOC_Os06g44090OsAffx.15918.1.S1_at11/116+26588785..26589682hypothetical protein
LOC_Os06g44100OsAffx.15919.1.S1_x_at11/116+26590908..26592467acetyltransferase, GNAT family protein
LOC_Os06g44100OsAffx.11941.1.S1_x_at2/116+26590908..26592467acetyltransferase, GNAT family protein
LOC_Os06g44110OsAffx.5770.1.S1_at1/116+26594256..26595141retrotransposon protein, putative, unclassified
LOC_Os06g44120NANA6+26606364..26606890retrotransposon protein, putative, unclassified
LOC_Os06g44130NANA6+26607733..26609425retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15918.1.S1_at--1119--2311Chr06:26589628..26589652 (25 bp)
AAAGTGTGCTACTACCTTGATCACA
LOC_Os06g44090
OsAffx.15918.1.S1_at--1135--4831Chr06:26589621..26589645 (25 bp)
GCTACTACCTTGATCACATCGTACA
LOC_Os06g44090
OsAffx.15918.1.S1_at--771--9391Chr06:26589603..26589627 (25 bp)
TCGTACAAGCCAAATACGGCGTCTT
LOC_Os06g44090
OsAffx.15918.1.S1_at--199--9931Chr06:26589589..26589613 (25 bp)
TACGGCGTCTTCACAGTTCACAGGG
LOC_Os06g44090
OsAffx.15918.1.S1_at--222--9471Chr06:26589560..26589584 (25 bp)
TCTGGTCAGGATGGTCCAGGCTCCT
LOC_Os06g44090
OsAffx.15918.1.S1_at--1149--8231Chr06:26589534..26589558 (25 bp)
GGCACGGCATGGATGGGCTACTCAA
LOC_Os06g44090
OsAffx.15918.1.S1_at--67--1371Chr06:26589141..26589165 (25 bp)
AGAGCGGATTAACGGATACTGGCAT
LOC_Os06g44090
OsAffx.15918.1.S1_at--998--11Chr06:26589118..26589142 (25 bp)
ATTGGCGGCGCCTATCCTATCCTGG
LOC_Os06g44090
OsAffx.15918.1.S1_at--353--11Chr06:26589100..26589124 (25 bp)
ATCCTGGTCCCCTGCAAAAACCTAG
LOC_Os06g44090
OsAffx.15918.1.S1_at--778--8591Chr06:26589066..26589090 (25 bp)
TGGTCACGGACATCACACTCACAGA
LOC_Os06g44090
OsAffx.15918.1.S1_at--663--5671Chr06:26589058..26589082 (25 bp)
GACATCACACTCACAGATCGCCTTT
LOC_Os06g44090
Target Sequence 
AAAGTGTGCTACTACCTTGATCACATCGTACAAGCCAAATACGGCGTCTTCACAGTTCACAGGGGAGCTCTGGTCAGGAT
GGTCCAGGCTCCTGGGCACGGCATGGATGGGCTACTCAAGAAAAAGAGCGGATTAACGGATACTGGCATTGGCGGCGCCT
ATCCTATCCTGGTCCCCTGCAAAAACCTAGGAGTGGTGGTGGTCACGGACATCACACTCACAGATCGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis