Browse Element(s) Details


OsAffx.28093.1.S1_at

Description tigr:9634.m04260
TID=OsAffx.28093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4404011/11DOMON domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44040OsAffx.28093.1.S1_at11/116+26562337..26565281DOMON domain containing protein, expressed
LOC_Os06g44050Os.27118.1.A1_at11/116+26568423..26571448Methyladenine glycosylase family protein, expressed
LOC_Os06g44060Os.6185.1.S1_at11/116+26574131..26578687Phospholipase D. Active site motif family protein, expressed
LOC_Os06g44070NANA6+26580705..26582751retrotransposon, putative, centromere-specific
LOC_Os06g44080Os.20327.1.S1_at11/116+26584563..26587133ubiquitin family protein, putative, expressed
LOC_Os06g44080OsAffx.28094.1.S1_at4/116+26584563..26587133ubiquitin family protein, putative, expressed
LOC_Os06g44090OsAffx.15918.1.S1_at11/116+26588785..26589682hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0008152biological_processmetabolism
GO:0016020cellular_componentmembrane
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28093.1.S1_at--381--3291Chr06:26564525..26564549 (25 bp)
CAAAGATCGGCACCGCGGCATTTGT
LOC_Os06g44040
OsAffx.28093.1.S1_at--188--8291Chr06:26564541..26564565 (25 bp)
GGCATTTGTTCTCGCTTGTCTGCAA
LOC_Os06g44040
OsAffx.28093.1.S1_at--93--2631Chr06:26564564..26564588 (25 bp)
AACCGATTAATGCTTATCTCCGACC
LOC_Os06g44040
OsAffx.28093.1.S1_at--1088--6071Chr06:26564644..26564668 (25 bp)
GAGTATCTGCACATTATCACCGGGA
LOC_Os06g44040
OsAffx.28093.1.S1_at--816--1271Chr06:26564668..26564692 (25 bp)
AGATCAGCTGTGGTAGTCGGCGCCA
LOC_Os06g44040
OsAffx.28093.1.S1_at--576--2491Chr06:26564757..26564781 (25 bp)
AACATGTGGGTTGATCCTGTGGGTT
LOC_Os06g44040
OsAffx.28093.1.S1_at--362--7071Chr06:26564788..26564812 (25 bp)
GTCACATTGGTGGTTGTTTACCTCG
LOC_Os06g44040
OsAffx.28093.1.S1_at--709--6811Chr06:26564803..26564827 (25 bp)
GTTTACCTCGAGTTCATGGCGGCGA
LOC_Os06g44040
OsAffx.28093.1.S1_at--990--8371Chr06:26564845..26564869 (25 bp)
GGCGCAGATGACCTTTCGGGTAAAT
LOC_Os06g44040
OsAffx.28093.1.S1_at--166--1251Chr06:26564901..26564925 (25 bp)
AGTTGATCTTTTGCAGTCCACTAAA
LOC_Os06g44040
OsAffx.28093.1.S1_at--1150--5051Chr06:26564958..26564982 (25 bp)
GCAGCTTGAGCCACTGAAAGGTTGA
LOC_Os06g44040
Target Sequence 
CAAAGATCGGCACCGCGGCATTTGTTCTCGCTTGTCTGCAACCGATTAATGCTTATCTCCGACCGCATTTGCTCGCGGAG
AATGGCGAAATTCTGCCAATGAAGAACAGGGTGATCTGGGAGTATCTGCACATTATCACCGGGAGATCAGCTGTGGTAGT
CGGCGCCATTGCACTCTTCACCGGCTTGCAGCATCTTGGTGACAGGTATGGCAGCAAGAACATCAAGGGGTTAACATGTG
GGTTGATCCTGTGGGTTGTGGGTGTCACATTGGTGGTTGTTTACCTCGAGTTCATGGCGGCGAGGCGAAGAAGAGGCGGC
GGCGCAGATGACCTTTCGGGTAAATGGGTGCTTGGCAACACTGATGAAGATGATTCAGTTGATCTTTTGCAGTCCACTAA
AATGGAGTCTGATTCGATTGAACCAATGGAGGTGCAGCTTGAGCCACTGAAAGGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis