Browse Element(s) Details


Os.27118.1.A1_at

Description gb:CB648596
DB_XREF= gi:29643589
DB_XREF=OSJNEb12A24.r
CLONE=OSJNEb12A24
TID=Os.27118.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27118 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_200605.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4405011/11Methyladenine glycosylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44040OsAffx.28093.1.S1_at11/116+26562337..26565281DOMON domain containing protein, expressed
LOC_Os06g44050Os.27118.1.A1_at11/116+26568423..26571448Methyladenine glycosylase family protein, expressed
LOC_Os06g44060Os.6185.1.S1_at11/116+26574131..26578687Phospholipase D. Active site motif family protein, expressed
LOC_Os06g44070NANA6+26580705..26582751retrotransposon, putative, centromere-specific
LOC_Os06g44080Os.20327.1.S1_at11/116+26584563..26587133ubiquitin family protein, putative, expressed
LOC_Os06g44080OsAffx.28094.1.S1_at4/116+26584563..26587133ubiquitin family protein, putative, expressed
LOC_Os06g44090OsAffx.15918.1.S1_at11/116+26588785..26589682hypothetical protein
LOC_Os06g44100OsAffx.15919.1.S1_x_at11/116+26590908..26592467acetyltransferase, GNAT family protein
LOC_Os06g44100OsAffx.11941.1.S1_x_at2/116+26590908..26592467acetyltransferase, GNAT family protein
LOC_Os06g44110OsAffx.5770.1.S1_at1/116+26594256..26595141retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0008725molecular_functionDNA-3-methyladenine glycosylase I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27118.1.A1_at--187--7971Chr06:26568995..26569019 (25 bp)
GGATCCTTCGATCGATACTGTTGGG
LOC_Os06g44050
Os.27118.1.A1_at--967--6491Chr06:26568934..26568958 (25 bp)
GATATCCAAGGCAAGTCCCTGTCAA
LOC_Os06g44050
Os.27118.1.A1_at--189--8371Chr06:26568857..26568881 (25 bp)
GGCGTGGGCCCAACAATCATATATT
LOC_Os06g44050
Os.27118.1.A1_at--1091--10211Chr06:26568836..26568860 (25 bp)
TATTCCTTCATGCAGGCAGCAGGGC
LOC_Os06g44050
Os.27118.1.A1_at--4--1091Chr06:26568816..26568840 (25 bp)
AGGGCTGACCAATGATCACCTTGTC
LOC_Os06g44050
Os.27118.1.A1_at--342--1731Chr06:26568799..26568823 (25 bp)
ACCTTGTCAGTTGCTTTCGGTTCAA
LOC_Os06g44050
Os.27118.1.A1_at--384--3011Chr06:26568767..26568791 (25 bp)
AATGAAGCTCCAACTCTTTGCACGA
LOC_Os06g44050
Os.27118.1.A1_at--767--8111Chr06:26568643..26568667 (25 bp)
GGACGATCGGTACGCTTATCATTTC
LOC_Os06g44050
Os.27118.1.A1_at--397--7871Chr06:26568593..26568617 (25 bp)
GGTTACTGTACCTGTATTGCCCATG
LOC_Os06g44050
Os.27118.1.A1_at--849--71Chr06:26568578..26568602 (25 bp)
ATTGCCCATGTGTAGGTTGTGTGCT
LOC_Os06g44050
Os.27118.1.A1_at--62--3251Chr06:26568485..26568509 (25 bp)
CAACCCAGTTTGTACATTGCTACCG
LOC_Os06g44050
Target Sequence 
GGATCCTTCGATCGATACTGTTGGGGCTTTTTGAACCACAAGCCAATAGTGAGCAAATTCCGATATCCAAGGCAAGTCCC
TGTCAAGAGCCCCAAGGCAGACATGATCAGCAAAGACATGGTCNGAAGGGGTTTCCNAGGCGTGGGCCCAACAATCATAT
ATTCCTTCATGCAGGCAGCAGGGCTGACCAATGATCACCTTGTCAGTTGCTTTCGGTTCAAAGAATGCAATGAAGCTCCA
ACTCTTTGCACGAGTGATACTAGCAATGCAAATTCAGAGGCAGATCTAAGTGCAGATGAACTGAGAACAAAAATCTGCAG
CAAGGAGATGGCTGCAAAAGCAGAGCTGTTGAGGACGATCGGTACGCTTATCATTTCATAGGACCATGTGGAACAGTGAT
GCGGTTACTGTACCTGTATTGCCCATGTGTAGGTTGTGTGCTAGGTTATCCTCAAAATGAGTTTTAGGGATCAAAATGCT
TTTGTGTATAAATCATTTGTGTCAGTAATGCAACCCAGTTTGTACATTGCTACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27118.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis