Browse Element(s) Details


Os.6185.1.S1_at

Description gb:AK122015.1
DB_XREF= gi:37991638
TID=Os.6185.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033111K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111K04, full insert sequence.
FL= gb:AK122015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4406011/11Phospholipase D. Active site motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44040OsAffx.28093.1.S1_at11/116+26562337..26565281DOMON domain containing protein, expressed
LOC_Os06g44050Os.27118.1.A1_at11/116+26568423..26571448Methyladenine glycosylase family protein, expressed
LOC_Os06g44060Os.6185.1.S1_at11/116+26574131..26578687Phospholipase D. Active site motif family protein, expressed
LOC_Os06g44070NANA6+26580705..26582751retrotransposon, putative, centromere-specific
LOC_Os06g44080Os.20327.1.S1_at11/116+26584563..26587133ubiquitin family protein, putative, expressed
LOC_Os06g44080OsAffx.28094.1.S1_at4/116+26584563..26587133ubiquitin family protein, putative, expressed
LOC_Os06g44090OsAffx.15918.1.S1_at11/116+26588785..26589682hypothetical protein
LOC_Os06g44100OsAffx.15919.1.S1_x_at11/116+26590908..26592467acetyltransferase, GNAT family protein
LOC_Os06g44100OsAffx.11941.1.S1_x_at2/116+26590908..26592467acetyltransferase, GNAT family protein
LOC_Os06g44110OsAffx.5770.1.S1_at1/116+26594256..26595141retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6185.1.S1_at--453--2771Chr06:26574695..26574719 (25 bp)
AAGACCGGACCTGCATTGGCGCAAG
LOC_Os06g44060
Os.6185.1.S1_at--541--10511Chr06:26574641..26574665 (25 bp)
TTCACCCGGGTGAACCATGGCAAGT
LOC_Os06g44060
Os.6185.1.S1_at--480--8231Chr06:26574623..26574647 (25 bp)
GGCAAGTACGCCGTCAGCGATGTGA
LOC_Os06g44060
Os.6185.1.S1_at--813--5151Chr06:26574580..26574604 (25 bp)
GCAACCTCATCTGGGATTACTTCTA
LOC_Os06g44060
Os.6185.1.S1_at--409--3311Chr06:26574552..26574576 (25 bp)
CACAGCCGGTGTCAGCTTCGGAACA
LOC_Os06g44060
Os.6185.1.S1_at--1161--10631Chr06:26574510..26574534 (25 bp)
TTCGCAGCTGCAGGATATCTTTGAT
LOC_Os06g44060
Os.6185.1.S1_at--23--3691Chr06:26574492..26574516 (25 bp)
CTTTGATGCAGATTGGTTTTCTCCA
LOC_Os06g44060
Os.6185.1.S1_at--484--9831Chr06:26574454..26574478 (25 bp)
TAAAACCACTGGAAGCATCTGCATA
LOC_Os06g44060
Os.6185.1.S1_at--772--6071Chr06:26574405..26574429 (25 bp)
GAGTAGGTCTTTTTTCACTTATTGC
LOC_Os06g44060
Os.6185.1.S1_at--1062--10371Chr06:26574164..26574188 (25 bp)
TTTTACTACCTCTTGAGCATTGCCT
LOC_Os06g44060
Os.6185.1.S1_at--451--5931Chr06:26574150..26574174 (25 bp)
GAGCATTGCCTCATCTAATCAATTT
LOC_Os06g44060
Target Sequence 
AAGACCGGACCTGCATTGGCGCAAGGCGCTGCGACGGGGAATCGCTACCCTGATTTCACCCGGGTGAACCATGGCAAGTA
CGCCGTCAGCGATGTGAGGGCGAACATCGGCACCAGCAACCTCATCTGGGATTACTTCTACACCACAGCCGGTGTCAGCT
TCGGAACANACAGCCNCGCCATTGTTTCGCAGCTGCAGGATATCTTTGATGCAGATTGGTTTTCTCCANACACTGNACCT
GTAAAACCACTGGAAGCATCTGCATAANATCAGGTGATCATTTCAGTTAGGAGTAGGTCTTTTTTCACTTATTGCCNAAN
AAAGAACGTCNCGGAGTGAGCTGGNNCAGNTNCAGGNCANAAACNGNCCATNNAACNAGGAGANTCNCATGCATCAACAA
CATTAGGNAGNTTTCACTGNCTCGNTTTTTGTCAAGAATCTGCAGATATTTTTTTTTCGNTTTCTCCAATAAGTTAGTTT
ACAGAAATTTTACTTCCCAGATGAGAAGTGTAAACTTTCAGAAAACATTGTACAAGTGTAAATTTTACTACCTCTTGAGC
ATTGCCTCATCTAATCAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis