Browse Element(s) Details


OsAffx.15952.1.S1_at

Description tigr:9634.m04509
TID=OsAffx.15952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=3-hydroxyisobutyrate dehydrogenase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4637211/113-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46360OsAffx.28131.1.S1_at11/116+28128074..28129081hypothetical protein
LOC_Os06g46366Os.17420.1.S1_at11/116+28132803..28137103Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g46372OsAffx.15952.1.S1_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46372Os.51846.1.S1_x_at11/116+28138206..281415543-hydroxyisobutyrate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os06g46380Os.7455.1.S1_at11/116+28142933..28147374Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os06g46390Os.51643.1.S1_at11/116+28147995..28148791small nuclear ribonucleoprotein, putative, expressed
LOC_Os06g46400Os.18000.1.A1_at11/116+28150362..28155785YT521-B-like family protein, expressed
LOC_Os06g46410Os.22750.1.S1_at11/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46410OsAffx.28217.1.S1_at1/116+28157512..28163559auxin response factor 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0003824molecular_functioncatalytic activity
GO:0004332molecular_functionfructose-bisphosphate aldolase activity
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15952.1.S1_at--970--1691Chr06:28140918..28140942 (25 bp)
ACCAAAACTTCTCCAGAACCATACT
LOC_Os06g46372
OsAffx.15952.1.S1_at--1034--2051Chr06:28140924..28140948 (25 bp)
ACTTCTCCAGAACCATACTATATTT
LOC_Os06g46372
OsAffx.15952.1.S1_at--757--5431Chr06:28140933..28140957 (25 bp)
GAACCATACTATATTTTCTCTGCTC
LOC_Os06g46372
OsAffx.15952.1.S1_at--415--331Chr06:28140938..28140962 (25 bp)
ATACTATATTTTCTCTGCTCAATCG
LOC_Os06g46372
OsAffx.15952.1.S1_at--1115--10191Chr06:28140942..28140966 (25 bp)
TATATTTTCTCTGCTCAATCGTTGC
LOC_Os06g46372
OsAffx.15952.1.S1_at--66--10391Chr06:28140946..28140970 (25 bp)
TTTTCTCTGCTCAATCGTTGCACAA
LOC_Os06g46372
OsAffx.15952.1.S1_at--689--9511Chr06:28140949..28140973 (25 bp)
TCTCTGCTCAATCGTTGCACAACTA
LOC_Os06g46372
OsAffx.15952.1.S1_at--1105--4811Chr06:28140954..28140978 (25 bp)
GCTCAATCGTTGCACAACTAACATT
LOC_Os06g46372
OsAffx.15952.1.S1_at--864--511Chr06:28140959..28140983 (25 bp)
ATCGTTGCACAACTAACATTAGTTT
LOC_Os06g46372
OsAffx.15952.1.S1_at--328--3571Chr06:28140975..28140999 (25 bp)
CATTAGTTTTTGCAGTTACCGAAAG
LOC_Os06g46372
OsAffx.15952.1.S1_at--528--10051Chr06:28140978..28141002 (25 bp)
TAGTTTTTGCAGTTACCGAAAGCTA
LOC_Os06g46372
Target Sequence 
ACCAAAACTTCTCCAGAACCATACTATATTTTCTCTGCTCAATCGTTGCACAACTAACATTAGTTTTTGCAGTTACCGAA
AGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis