Browse Element(s) Details


OsAffx.15954.1.S1_at

Description tigr:9634.m04517
TID=OsAffx.15954.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4644011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46410Os.22750.1.S1_at11/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46410OsAffx.28217.1.S1_at1/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46420OsAffx.15953.1.S1_at11/116+28171763..28172389hypothetical protein
LOC_Os06g46430OsAffx.28132.1.S1_at8/116+28176435..28177924hypothetical protein
LOC_Os06g46440OsAffx.15954.1.S1_at11/116+28188529..28189857expressed protein
LOC_Os06g46450Os.21295.1.S1_at11/116+28189959..28195207Polyprenyl synthetase family protein, expressed
LOC_Os06g46460OsAffx.28133.1.S1_at11/116+28202819..28203372expressed protein
LOC_Os06g46470NANA6+28204290..28204619expressed protein
LOC_Os06g46480Os.55138.1.S1_x_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480OsAffx.27256.1.S1_s_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480Os.53992.1.S1_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15954.1.S1_at--253--4911Chr06:28189117..28189282 (25 bp)
GCTTCCAAACTCAGGCCGATCGCGA
LOC_Os06g46440
OsAffx.15954.1.S1_at--490--9371Chr06:28189324..28189348 (25 bp)
TCGACGAGATGCGACTACCAGAGCA
LOC_Os06g46440
OsAffx.15954.1.S1_at--222--6351Chr06:28189331..28189355 (25 bp)
GATGCGACTACCAGAGCAGCTTCAC
LOC_Os06g46440
OsAffx.15954.1.S1_at--185--1371Chr06:28189343..28189367 (25 bp)
AGAGCAGCTTCACGTGCTCGACGGC
LOC_Os06g46440
OsAffx.15954.1.S1_at--297--4771Chr06:28189385..28189409 (25 bp)
GCTGCTACTACTACGCCGGCAGGAC
LOC_Os06g46440
OsAffx.15954.1.S1_at--1085--9051Chr06:28189498..28189522 (25 bp)
TGCTTCACGTCCAACCCGGAGACGA
LOC_Os06g46440
OsAffx.15954.1.S1_at--220--1451Chr06:28189525..28189549 (25 bp)
AGCAACGGGCACAGCTTCCGGCGGA
LOC_Os06g46440
OsAffx.15954.1.S1_at--656--5631Chr06:28189591..28189615 (25 bp)
GACACCGACACAGCGACCGAGTGGT
LOC_Os06g46440
OsAffx.15954.1.S1_at--44--2151Chr06:28189600..28189624 (25 bp)
ACAGCGACCGAGTGGTCCCAGTACT
LOC_Os06g46440
OsAffx.15954.1.S1_at--109--1111Chr06:28189610..28189634 (25 bp)
AGTGGTCCCAGTACTCTCACGCCGA
LOC_Os06g46440
OsAffx.15954.1.S1_at--994--3731Chr06:28189625..28189649 (25 bp)
CTCACGCCGACTACGGGTACTACTA
LOC_Os06g46440
Target Sequence 
GCTTCCAAACTCAGGCCGATCGCGATCCCGTCGCGGCGGTACGACTCGTCGCCGCCGTCGACGGCGTCGACGAGATGCGA
CTACCAGAGCAGCTTCACGTGCTCGACGGCGGCGTACCCGGCGTCGCGCTGCTACTACTACGCCGGCAGGACGGCGGCGA
CGAACCACAGCAGCGCGGCGAGCAGCCACGCGGCGGCGCAGCAGCACCGTCACCACCACCGCGGCGGCGGCGGCTTCTGC
TGCTTCACGTCCAACCCGGAGACGACCAGCAACGGGCACAGCTTCCGGCGGACGCGCGCCGGCGGCAGGAGGGCGCGGTC
GCCGGCGGCGACCGACACCGACACAGCGACCGAGTGGTCCCAGTACTCTCACGCCGACTACGGGTACTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis