Browse Element(s) Details


OsAffx.15957.1.S1_at

Description tigr:9634.m04539
TID=OsAffx.15957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4665010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46620NANA6+28308625..28309734hypothetical protein
LOC_Os06g46630NANA6+28310682..28311503retrotransposon protein, putative, unclassified
LOC_Os06g46640OsAffx.15956.1.S1_at11/116+28325582..28325983hypothetical protein
LOC_Os06g46650OsAffx.15957.1.S1_at10/116+28333625..28335884hypothetical protein
LOC_Os06g46659NANA6+28338761..28339010NA
LOC_Os06g46670Os.27451.1.S1_at11/116+28344395..28350244Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os06g46680Os.49708.1.S1_at11/116+28354129..28357367cytochrome P450, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15957.1.S1_at--435--1211Chr06:28335808..28335832 (25 bp)
AGTTTTTCTGGCGATCGACAGCAAA
LOC_Os06g46650
OsAffx.15957.1.S1_at--365--5651Chr06:28335792..28335816 (25 bp)
GACAGCAAAGGGTACAGCGCCGCCT
LOC_Os06g46650
OsAffx.15957.1.S1_at--389--9871Chr06:28335780..28335804 (25 bp)
TACAGCGCCGCCTGCAAGAGCATCT
LOC_Os06g46650
OsAffx.15957.1.S1_at--887--9671NONE
TCACCTGGCGCAGCCTGGTTCGGTA
NONE
OsAffx.15957.1.S1_at--959--251Chr06:28333896..28333920 (25 bp)
ATAGTCACAAAGTTCCCTGGTCCAT
LOC_Os06g46650
OsAffx.15957.1.S1_at--590--2331Chr06:28333888..28333912 (25 bp)
AAAGTTCCCTGGTCCATTGGATCAA
LOC_Os06g46650
OsAffx.15957.1.S1_at--1004--2371Chr06:28333793..28333873 (25 bp)
AAACGTGTATATGGACGAGCTCTTC
LOC_Os06g46650
OsAffx.15957.1.S1_at--368--5911Chr06:28333777..28333801 (25 bp)
GAGCTCTTCGTGAACCATGGCGGGC
LOC_Os06g46650
OsAffx.15957.1.S1_at--955--8031Chr06:28333724..28333748 (25 bp)
GGAGTTGTGTCATCCATGGAAGGAT
LOC_Os06g46650
OsAffx.15957.1.S1_at--286--2911Chr06:28333705..28333729 (25 bp)
AAGGATGGTGGCTCGATCGACAAAG
LOC_Os06g46650
OsAffx.15957.1.S1_at--203--8691Chr06:28333670..28333694 (25 bp)
TGTGAAGACTCACCTTGCACGATCT
LOC_Os06g46650
Target Sequence 
AGTTTTTCTGGCGATCGACAGCAAAGGGTACAGCGCCGCCTGCAAGAGCATCTCTCTCACCTGGCGCAGCCTGGTTCGGT
ATGGGAGGTGTTGGGACGTGCAGGGATGGAACCATAGTCACAAAGTTCCCTGGTCCATTGGATCAAAGAACGGGGTCGAG
AAACGTGTATATGGACGAGCTCTTCGTGAACCATGGCGGGCATCGTGCTGGTTTCGCCGCCCCTTCGCCGGAGTTGTGTC
ATCCATGGAAGGATGGTGGCTCGATCGACAAAGGGAAAATGGTTGTGAAGACTCACCTTGCACGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis