Browse Element(s) Details


OsAffx.16036.1.S1_x_at

Description gb:NM_186158.1
DB_XREF= gi:34899401
GEN=P0585H11.23
TID=OsAffx.16036.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein, similar to Oryza sativa chromosome 4, OSJNBa0006B20.14 (P0585H11.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g018309/11hypothetical protein
LOC_Os12g051441/11hypothetical protein
LOC_Os01g547601/11hypothetical protein
LOC_Os12g381901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01810Os.29959.1.S1_at11/117+465585..467052calcium-activated outward-rectifying potassium channel 6, putative, expressed
LOC_Os07g01820Os.12750.1.S1_x_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.2.S1_s_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.12750.1.S1_a_at11/117+469473..475954MADS2, putative, expressed
LOC_Os07g01820Os.57543.1.S1_at2/117+469473..475954MADS2, putative, expressed
LOC_Os07g01830OsAffx.16036.1.S1_x_at9/117+489913..490657hypothetical protein
LOC_Os07g01840Os.20517.1.S1_at11/117+494780..497280expressed protein
LOC_Os07g01850Os.21876.1.S1_at11/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01850OsAffx.5177.1.S1_at8/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01860Os.38052.1.S1_at11/117+514165..520238expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16036.1.S1_x_at--746--5613Chr12:23418203..23418675 (25 bp)
GACAACAGATTTTGACAAGATGGGT
NONE
OsAffx.16036.1.S1_x_at--1111--2134Chr12:23418658..23418679 (22 bp)
ACAGATTTTGACAAGATGGGTTCAA
NONE
OsAffx.16036.1.S1_x_at--85--2211Chr07:489953..489977 (25 bp)
ACAACTTCGCCGTGGGGATGTCTCT
LOC_Os07g01830
OsAffx.16036.1.S1_x_at--1069--7653Chr12:23418747..23418768 (22 bp)
GGGATGTCTCTCGACGAGATCGGAA
LOC_Os12g38190
OsAffx.16036.1.S1_x_at--699--4071Chr07:490018..490042 (25 bp)
CGAGATCGACCGAGCCTCAAGATAC
LOC_Os07g01830
OsAffx.16036.1.S1_x_at--149--2172Chr07:490528..490552 (25 bp)
ACACCGTATTGTCGAGAACGTTCTT
LOC_Os07g01830
OsAffx.16036.1.S1_x_at--701--2531Chr07:490544..490568 (25 bp)
AACGTTCTTGACAAATGCATAGTCG
LOC_Os07g01830
OsAffx.16036.1.S1_x_at--594--6731Chr07:490547..490571 (25 bp)
GTTCTTGACAAATGCATAGTCGTCG
LOC_Os07g01830
OsAffx.16036.1.S1_x_at--289--9571Chr07:490549..490573 (25 bp)
TCTTGACAAATGCATAGTCGTCGCT
LOC_Os07g01830
OsAffx.16036.1.S1_x_at--488--10751Chr07:490551..490575 (25 bp)
TTGACAAATGCATAGTCGTCGCTCC
LOC_Os07g01830
OsAffx.16036.1.S1_x_at--842--8951Chr07:490552..490576 (25 bp)
TGACAAATGCATAGTCGTCGCTCCC
LOC_Os07g01830
Target Sequence 
GACAACAGATTTTGACAAGATGGGTTCAAAAGATGGATTCTCCGACAATAAGCTACTCGACAACTTCGCCGTGGGGATGT
CTCTCGACGAGATCGGAACCATCGTCATCAACAACTCGATCTCTCGAGATCGACCGAGCCTCAAGATACGCGGCGTACCA
AAAGATGTCAGATCATGTGATGTCGAACGAGTACGCTACAAGGAACAATTGAGCACTCGAGTAGGATGTGGTCGAGTACA
CCGTATTGTCGAGAACGTTCTTGACAAATGCATAGTCGTCGCTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16036.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis