Browse Element(s) Details


OsAffx.16038.1.S1_s_at

Description tigr:9635.m00103
TID=OsAffx.16038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0199011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01940Os.9352.1.S1_a_at11/117+573863..580491expressed protein
LOC_Os07g01950Os.10404.1.S1_at11/117+581828..585086expressed protein
LOC_Os07g01960OsAffx.16037.2.S1_at11/117+585901..586437hypothetical protein
LOC_Os07g01960OsAffx.16037.2.S1_s_at11/117+585901..586437hypothetical protein
LOC_Os07g01970OsAffx.22516.1.S1_at11/117+586973..587809retrotransposon protein, putative, unclassified
LOC_Os07g01990OsAffx.16038.1.S1_s_at11/117+602885..605785expressed protein
LOC_Os07g01990Os.18016.1.S1_at11/117+602885..605785expressed protein
LOC_Os07g02000Os.7514.1.S1_at11/117+605984..606947expressed protein
LOC_Os07g02030OsAffx.10277.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030OsAffx.10277.1.S1_x_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030Os.9443.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02040OsAffx.28227.1.S1_x_at10/117+621772..622759hypothetical protein
LOC_Os07g02040Os.50959.1.S1_at1/117+621772..622759hypothetical protein
LOC_Os07g02050NANA7+626147..626607retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g02060Os.38985.1.S1_at11/117+628861..632615WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16038.1.S1_s_at--803--10011Chr07:603132..603416 (25 bp)
TAGAAATTATCTCAACAGGCTGTTA
LOC_Os07g01990
OsAffx.16038.1.S1_s_at--1153--3731Chr07:603295..603315 (21 bp)
CTCAACAGGCTGTTAACTTCTTGGG
LOC_Os07g01990
OsAffx.16038.1.S1_s_at--302--7571Chr07:603233..603257 (25 bp)
GGGCGGTAATGTTGCAGCGATATTT
LOC_Os07g01990
OsAffx.16038.1.S1_s_at--338--6671Chr07:603223..603247 (25 bp)
GTTGCAGCGATATTTATTGCGTCCA
LOC_Os07g01990
OsAffx.16038.1.S1_s_at--198--3391Chr07:603219..603243 (25 bp)
CAGCGATATTTATTGCGTCCAGTGC
LOC_Os07g01990
OsAffx.16038.1.S1_s_at--833--6511Chr07:603215..603239 (25 bp)
GATATTTATTGCGTCCAGTGCAGTT
LOC_Os07g01990
OsAffx.16038.1.S1_s_at--809--10351Chr07:603211..603235 (25 bp)
TTTATTGCGTCCAGTGCAGTTGGGA
LOC_Os07g01990
OsAffx.16038.1.S1_s_at--59--10631Chr07:603207..603231 (25 bp)
TTGCGTCCAGTGCAGTTGGGACTTT
LOC_Os07g01990
OsAffx.16038.1.S1_s_at--178--9231Chr07:603202..603226 (25 bp)
TCCAGTGCAGTTGGGACTTTGAGTG
LOC_Os07g01990
OsAffx.16038.1.S1_s_at--568--5031Chr07:603196..603220 (25 bp)
GCAGTTGGGACTTTGAGTGCTAAAA
LOC_Os07g01990
OsAffx.16038.1.S1_s_at--264--8631Chr07:603191..603215 (25 bp)
TGGGACTTTGAGTGCTAAAATAGAT
LOC_Os07g01990
Target Sequence 
TAGAAATTATCTCAACAGGCTGTTAACTTCTTGGGGGGTGCCCAATGGGGAGTTTCGAGATAAGCTAATGTGGGGCGGTA
ATGTTGCAGCGATATTTATTGCGTCCAGTGCAGTTGGGACTTTGAGTGCTAAAATAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16038.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis