Browse Element(s) Details


OsAffx.16069.1.S1_at

Description tigr:9635.m00301
TID=OsAffx.16069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY086277 26S proteasome non-ATPase regulatory subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0376011/11Mov34/MPN/PAD-1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03720OsAffx.19542.3.S1_x_at7/117+1515832..1520054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03730Os.19861.1.S1_at11/117+1521964..1522842Pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03740OsAffx.16187.1.S1_at1/117+1528205..1535233SCP-like extracellular protein
LOC_Os07g03750OsAffx.28250.1.S1_at11/117+1537779..1538297Pathogenesis-related protein PRMS precursor, putative
LOC_Os07g03760OsAffx.16069.1.S1_at11/117+1539463..1541976Mov34/MPN/PAD-1 family protein
LOC_Os07g03770Os.2254.1.S1_at11/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03770Os.44546.1.A1_x_at10/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03770Os.44546.1.A1_at8/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16069.1.S1_at--212--7251Chr07:1540337..1540361 (25 bp)
GTCCCTCCAATCATGATTCTGTTTT
LOC_Os07g03760
OsAffx.16069.1.S1_at--822--4731Chr07:1540159..1540183 (25 bp)
GCTGAACCCCAGAGCAATACTTGTT
LOC_Os07g03760
OsAffx.16069.1.S1_at--410--3091Chr07:1540144..1540168 (25 bp)
AATACTTGTTGCTGTGGACCCTGTC
LOC_Os07g03760
OsAffx.16069.1.S1_at--1128--5251Chr07:1540093..1540117 (25 bp)
GAATGCATTTCGATCAGTGACCTCT
LOC_Os07g03760
OsAffx.16069.1.S1_at--469--2911Chr07:1539879..1539903 (25 bp)
AAGGATTGGCCTCAGTGTTCTACTC
LOC_Os07g03760
OsAffx.16069.1.S1_at--473--6731Chr07:1539863..1539887 (25 bp)
GTTCTACTCGATTCTGATAAGCCAT
LOC_Os07g03760
OsAffx.16069.1.S1_at--156--6111Chr07:1539758..1539782 (25 bp)
GAGTCTGTGTCAGTTTCCTGTTATG
LOC_Os07g03760
OsAffx.16069.1.S1_at--1043--3011Chr07:1539607..1539631 (25 bp)
AATGCTGATTGATCTACTCACCAAG
LOC_Os07g03760
OsAffx.16069.1.S1_at--996--6111Chr07:1539556..1539580 (25 bp)
GAGTGATGCACCTGAGAATCCGCCT
LOC_Os07g03760
OsAffx.16069.1.S1_at--879--5251Chr07:1539541..1539565 (25 bp)
GAATCCGCCTGACGCAGAAAATCAT
LOC_Os07g03760
OsAffx.16069.1.S1_at--394--6111Chr07:1539493..1539517 (25 bp)
GAGTGCATGCATACTTCAGATTTTT
LOC_Os07g03760
Target Sequence 
GTCCCTCCAATCATGATTCTGTTTTTCACAAGGCCTTTGAACAGCTGAACCCCAGAGCAATACTTGTTGCTGTGGACCCT
GTCAAGAGTGCGACGGGGAATTTTACGATGAATGCATTTCGATCAGTGACCTCTTATCATGAAACTTCATCCAATGTTGG
AGCACTGAATCGAGAGTACTACAGCGTAGCGGAAGATGAGAAACCGTTCTTCGAGTTGGACATATTTGCACAAGGATTGG
CCTCAGTGTTCTACTCGATTCTGATAAGCCATCGGAAGAATGACCTTGAGATAAATATTTTGAAAAGCATGGACAAGATG
GGAAGCAAAGGTTCGTCTAGTGAGGATTGCAGGAGTCTGTGTCAGTTTCCTGTTATGAGTGAATCTGAGAAGAAGAATGT
TGAAGAAATGCTGATTGATCTACTCACCAAGTACCAGAACGAGGAGGAAATGCAAGAGAGTGATGCACCTGAGAATCCGC
CTGACGCAGAAAATCATCTTGAAGAGCTTAAAAACCTGATGAGTGCATGCATACTTCAGATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis