Browse Element(s) Details


OsAffx.16083.1.S1_at

Description tigr:9635.m00392
TID=OsAffx.16083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0461011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04570OsAffx.5210.1.S1_at10/117+2031013..2032041RNA recognition motif family protein
LOC_Os07g04580Os.57389.1.S1_at10/117+2033472..2035042Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g04590OsAffx.28270.2.S1_at11/117+2040785..2042485hypothetical protein
LOC_Os07g04600OsAffx.5211.1.S1_at11/117+2044857..2047490hypothetical protein
LOC_Os07g04610OsAffx.16083.1.S1_at11/117+2048397..2049157hypothetical protein
LOC_Os07g04620OsAffx.28265.1.S1_at11/117+2050708..2051394hypothetical protein
LOC_Os07g04630NANA7+2052778..2053215hypothetical protein
LOC_Os07g04650OsAffx.28267.1.S1_at11/117+2060481..2062147Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g04660OsAffx.16085.1.S1_at11/117+2063509..2064003ABC transporter family protein, putative
LOC_Os07g04670OsAffx.28268.1.S1_at11/117+2065644..2066474hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16083.1.S1_at--989--1471Chr07:2049086..2049110 (25 bp)
AGAATTAGATGCTCTCGACACCGTC
LOC_Os07g04610
OsAffx.16083.1.S1_at--971--2931Chr07:2049058..2049082 (25 bp)
AAGGCAGTCGGCGACGCCGTTCGCT
LOC_Os07g04610
OsAffx.16083.1.S1_at--236--1831Chr07:2049045..2049069 (25 bp)
ACGCCGTTCGCTTCGCGTTAAAGAT
LOC_Os07g04610
OsAffx.16083.1.S1_at--747--4911Chr07:2049036..2049060 (25 bp)
GCTTCGCGTTAAAGATGGATCCTAA
LOC_Os07g04610
OsAffx.16083.1.S1_at--382--4291Chr07:2048858..2048882 (25 bp)
CCTCCTGCAGTTTGCGGCGACGCAA
LOC_Os07g04610
OsAffx.16083.1.S1_at--228--8391Chr07:2048843..2048867 (25 bp)
GGCGACGCAACAGATAATCCCGATC
LOC_Os07g04610
OsAffx.16083.1.S1_at--53--9731Chr07:2048829..2048853 (25 bp)
TAATCCCGATCAGTGCGAGGCTGTT
LOC_Os07g04610
OsAffx.16083.1.S1_at--373--4051Chr07:2048823..2048847 (25 bp)
CGATCAGTGCGAGGCTGTTCGTGTT
LOC_Os07g04610
OsAffx.16083.1.S1_at--892--4351Chr07:2048756..2048780 (25 bp)
CCACTTCAAGCGCTACGGGTATGTG
LOC_Os07g04610
OsAffx.16083.1.S1_at--13--4591Chr07:2048747..2048771 (25 bp)
GCGCTACGGGTATGTGGCCGACATC
LOC_Os07g04610
OsAffx.16083.1.S1_at--139--8311Chr07:2048704..2048728 (25 bp)
GGCTACGCCTTCGTCCAGTTGAGGA
LOC_Os07g04610
Target Sequence 
AGAATTAGATGCTCTCGACACCGTCGCCAAGGCAGTCGGCGACGCCGTTCGCTTCGCGTTAAAGATGGATCCTAAGACCA
CCTTCCTCGCCCACGGCCTCGCCGATTTCGTCGCCTCCGCCGCCGCACGCGACGCGCTCTCCCCCATCTTCGCCAAGTTG
GCAGCCGCCGAGCCGCCGCCGCCGCCCAGTACAACGGCGCCGATCATCGCGGCGCCGGCGTGGGCGCCCCTCCTGCAGTT
TGCGGCGACGCAACAGATAATCCCGATCAGTGCGAGGCTGTTCGTGTTCGGCGTCTCCAAGAAGCGCACCACCGAGCTCG
ACCTCCGCCGCCACTTCAAGCGCTACGGGTATGTGGCCGACATCTGGCTGCGCCGTCGCGGCGGCTACGCCTTCGTCCAG
TTGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis