Browse Element(s) Details


OsAffx.16095.1.S1_at

Description gb:NM_186311.1
DB_XREF= gi:34899707
GEN=OSJNBa0077B15.20
TID=OsAffx.16095.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0077B15.20 (OSJNBa0077B15.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0525011/11hypothetical protein
LOC_Os12g129701/11RWP-RK domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05220OsAffx.18764.1.S1_at1/117+2356255..2356944hypothetical protein
LOC_Os07g05230OsAffx.16205.1.S1_at2/117+2357282..2359056hypothetical protein
LOC_Os07g05230OsAffx.5022.1.S1_at1/117+2357282..2359056hypothetical protein
LOC_Os07g05240OsAffx.1494.1.S1_at11/117+2359825..2362695retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05240Os.12213.1.S1_at2/117+2359825..2362695retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05240Os.5966.1.S1_at1/117+2359825..2362695retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05250OsAffx.16095.1.S1_at11/117+2365927..2366456hypothetical protein
LOC_Os07g05260Os.44486.1.S1_at11/117+2367490..2368947expressed protein
LOC_Os07g05270OsAffx.16096.1.S1_s_at11/117+2375734..2376125hypothetical protein
LOC_Os07g05270OsAffx.16096.1.S1_at7/117+2375734..2376125hypothetical protein
LOC_Os07g05280NANA7+2380861..2384823retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05290Os.33267.1.S1_at11/117+2388007..2389172expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16095.1.S1_at--170--1731Chr07:2365988..2366012 (25 bp)
ACGGATTTTTCCAGCCGGAGCCACT
LOC_Os07g05250
OsAffx.16095.1.S1_at--17--10371Chr07:2365993..2366017 (25 bp)
TTTTTCCAGCCGGAGCCACTTATGC
LOC_Os07g05250
OsAffx.16095.1.S1_at--1032--9531Chr07:2366012..2366036 (25 bp)
TTATGCCCCGCCTGGAAACTAACGG
LOC_Os07g05250
OsAffx.16095.1.S1_at--1114--8473Chr11:23843200..23843221 (22 bp)
TGGCGTCCAAGAAAATCAATCCTGT
NONE
OsAffx.16095.1.S1_at--644--551Chr07:2366058..2366082 (25 bp)
ATCCTGTAGTAGTGCATGGTCGCCT
LOC_Os07g05250
OsAffx.16095.1.S1_at--924--10051Chr07:2366064..2366088 (25 bp)
TAGTAGTGCATGGTCGCCTCTACCG
LOC_Os07g05250
OsAffx.16095.1.S1_at--715--4131Chr07:2366087..2366111 (25 bp)
CGCTCGTCGGAGTTTCATGCTCAGA
LOC_Os07g05250
OsAffx.16095.1.S1_at--509--10331Chr07:2366099..2366123 (25 bp)
TTTCATGCTCAGACCTGCTTCAGTG
LOC_Os07g05250
OsAffx.16095.1.S1_at--842--4151Chr07:2366125..2366149 (25 bp)
CGCGCGCTCAAGCATGAGACCGATA
LOC_Os07g05250
OsAffx.16095.1.S1_at--1090--5351Chr07:2366155..2366179 (25 bp)
GAAGAGGCTTCGTCATTGCCGCGGC
LOC_Os07g05250
OsAffx.16095.1.S1_at--1012--4511Chr07:2366172..2366196 (25 bp)
GCCGCGGCCTACTGTACAAGCTGAA
LOC_Os07g05250
Target Sequence 
ACGGATTTTTCCAGCCGGAGCCACTTATGCCCCGCCTGGAAACTAACGGGGCTGGCGTCCAAGAAAATCAATCCTGTAGT
AGTGCATGGTCGCCTCTACCGCTCGTCGGAGTTTCATGCTCAGACCTGCTTCAGTGCCGCGCGCTCAAGCATGAGACCGA
TAATGGGGAAGAGGCTTCGTCATTGCCGCGGCCTACTGTACAAGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis