Browse Element(s) Details


OsAffx.16096.1.S1_s_at

Description gb:NM_186315.1
DB_XREF= gi:34899715
GEN=OSJNBa0077B15.24
TID=OsAffx.16096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0077B15.24 (OSJNBa0077B15.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0527011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05220OsAffx.18764.1.S1_at1/117+2356255..2356944hypothetical protein
LOC_Os07g05230OsAffx.16205.1.S1_at2/117+2357282..2359056hypothetical protein
LOC_Os07g05230OsAffx.5022.1.S1_at1/117+2357282..2359056hypothetical protein
LOC_Os07g05240OsAffx.1494.1.S1_at11/117+2359825..2362695retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05240Os.12213.1.S1_at2/117+2359825..2362695retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05240Os.5966.1.S1_at1/117+2359825..2362695retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05250OsAffx.16095.1.S1_at11/117+2365927..2366456hypothetical protein
LOC_Os07g05260Os.44486.1.S1_at11/117+2367490..2368947expressed protein
LOC_Os07g05270OsAffx.16096.1.S1_s_at11/117+2375734..2376125hypothetical protein
LOC_Os07g05270OsAffx.16096.1.S1_at7/117+2375734..2376125hypothetical protein
LOC_Os07g05280NANA7+2380861..2384823retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05290Os.33267.1.S1_at11/117+2388007..2389172expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16096.1.S1_s_at--821--7651Chr07:2375835..2375859 (25 bp)
GGGATCACGCCACGTGAGAGCTCAA
LOC_Os07g05270
OsAffx.16096.1.S1_s_at--454--1911Chr07:2375846..2375870 (25 bp)
ACGTGAGAGCTCAAGCGGTGCCGCC
LOC_Os07g05270
OsAffx.16096.1.S1_s_at--276--7351Chr07:2375944..2375968 (25 bp)
GTGAACATGGATGCCCAGAAGCAGA
LOC_Os07g05270
OsAffx.16096.1.S1_s_at--244--6431Chr07:2375967..2375991 (25 bp)
GATCAGGATGGGTGATTCGCTACCA
LOC_Os07g05270
OsAffx.16096.1.S1_s_at--951--7751Chr07:2375977..2376001 (25 bp)
GGTGATTCGCTACCAATTGTGCCGT
LOC_Os07g05270
OsAffx.16096.1.S1_s_at--952--3171Chr07:2375990..2376014 (25 bp)
CAATTGTGCCGTCGGTGGCATTCAT
LOC_Os07g05270
OsAffx.16096.1.S1_s_at--810--9431Chr07:2376001..2376025 (25 bp)
TCGGTGGCATTCATCAGGGTTCATC
LOC_Os07g05270
OsAffx.16096.1.S1_s_at--1160--111Chr07:2376009..2376033 (25 bp)
ATTCATCAGGGTTCATCCGCAGGCT
LOC_Os07g05270
OsAffx.16096.1.S1_s_at--519--6611Chr07:2376074..2376098 (25 bp)
GATTGGATGGGAAAATGACCTCTTT
LOC_Os07g05270
OsAffx.16096.1.S1_s_at--519--2271Chr07:2376086..2376110 (25 bp)
AAATGACCTCTTTCCCTATGGCATG
LOC_Os07g05270
OsAffx.16096.1.S1_s_at--168--3711Chr07:2376101..2376125 (25 bp)
CTATGGCATGGATCCCTTCAGATAA
LOC_Os07g05270
Target Sequence 
GGGATCACGCCACGTGAGAGCTCAAGCGGTGCCGCCGCACGTCACTTCGGCAGCGCTGGGGGGGAAGGATGGGGACGCCG
GAGGTGACGGCGACGGAGCGAGGCGGCTGGTGAACATGGATGCCCAGAAGCAGATCAGGATGGGTGATTCGCTACCAATT
GTGCCGTCGGTGGCATTCATCAGGGTTCATCCGCAGGCTGAGGTAAGAAATCTGTGTTCTCGCGGTTGTTTATCATGCAG
ATTGGATGGGAAAATGACCTCTTTCCCTATGGCATGGATCCCTTCAGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16096.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis