Browse Element(s) Details


OsAffx.16100.1.S1_at

Description tigr:9635.m00497
TID=OsAffx.16100.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0559011/11hypothetical protein
LOC_Os05g510601/11DNA ligase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05550Os.49224.1.S1_at11/117+2594019..2597171expressed protein
LOC_Os07g05560OsAffx.5222.1.S1_at11/117+2597362..2599140pentatricopeptide, putative, expressed
LOC_Os07g05570Os.4890.1.S1_at11/117+2599490..2604517ERD4 protein, putative, expressed
LOC_Os07g05570OsAffx.31218.1.S1_at1/117+2599490..2604517ERD4 protein, putative, expressed
LOC_Os07g05580Os.4779.1.S1_at11/117+2612231..261462340S ribosomal protein S12, putative, expressed
LOC_Os07g05590OsAffx.16100.1.S1_at11/117+2621590..2623289hypothetical protein
LOC_Os07g05600NANA7+2626653..2631386retrotransposon protein, putative, unclassified
LOC_Os07g05610Os.9372.1.S1_at11/117+2632631..2638789expressed protein
LOC_Os07g05620Os.27738.1.S1_at11/117+2641852..2646073CIPK-like protein 1, putative, expressed
LOC_Os07g05620Os.51613.1.S1_x_at1/117+2641852..2646073CIPK-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16100.1.S1_at--587--5751Chr07:2622583..2622607 (25 bp)
GACGGTTTGGATTATCATCAGCACA
LOC_Os07g05590
OsAffx.16100.1.S1_at--147--5531Chr07:2622558..2622582 (25 bp)
GAAAAATGCCTACTGCAGCTCTACT
LOC_Os07g05590
OsAffx.16100.1.S1_at--568--10591Chr07:2622534..2622558 (25 bp)
TTCTCCACAACAACGAAGGCATGCG
LOC_Os07g05590
OsAffx.16100.1.S1_at--418--611Chr07:2622514..2622538 (25 bp)
ATGCGAATACACTACTGCGTCGATT
LOC_Os07g05590
OsAffx.16100.1.S1_at--312--9911Chr07:2621807..2621831 (25 bp)
TACTGAATGTCTCTGCAATGCTGGG
LOC_Os07g05590
OsAffx.16100.1.S1_at--163--4171Chr07:2621767..2621791 (25 bp)
CGCCGTCGTCGGATGCATTATGAAG
LOC_Os07g05590
OsAffx.16100.1.S1_at--170--6331Chr07:2621756..2621780 (25 bp)
GATGCATTATGAAGCCCCACTTTGA
LOC_Os07g05590
OsAffx.16100.1.S1_at--846--3311Chr07:2621739..2621763 (25 bp)
CACTTTGAGGCCCAGCTAGAGAAGC
LOC_Os07g05590
OsAffx.16100.1.S1_at--776--2692Chr07:2621718..2621742 (25 bp)
AAGCTTGCCCAAGCTTTTGTTTTGT
LOC_Os07g05590
OsAffx.16100.1.S1_at--161--8791Chr07:2621701..2621725 (25 bp)
TGTTTTGTTGTTTCTACTGGCTCTA
LOC_Os07g05590
OsAffx.16100.1.S1_at--914--6831Chr07:2621692..2621716 (25 bp)
GTTTCTACTGGCTCTACTTCAAGCA
LOC_Os07g05590
Target Sequence 
GACGGTTTGGATTATCATCAGCACAGAAAAATGCCTACTGCAGCTCTACTTCTCCACAACAACGAAGGCATGCGAATACA
CTACTGCGTCGATTTAGGGACAAAATTATCCAAACCTGGAGGCATGAAGAAACACGTGAGATGATACTGAATGTCTCTGC
AATGCTGGGTTTGGTTGCTGTCGTCGCCGTCGTCGGATGCATTATGAAGCCCCACTTTGAGGCCCAGCTAGAGAAGCTTG
CCCAAGCTTTTGTTTTGTTGTTTCTACTGGCTCTACTTCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis