Browse Element(s) Details


OsAffx.16111.2.S1_at

Description tigr:9635.m00532
TID=OsAffx.16111.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0593011/11hypothetical protein
LOC_Os10g243106/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05900OsAffx.28295.1.S1_x_at11/117+2837776..2838279hypothetical protein
LOC_Os07g05910OsAffx.28296.1.S1_at10/117+2846747..2847231hypothetical protein
LOC_Os07g05920NANA7+2854479..2855022hypothetical protein
LOC_Os07g05930OsAffx.16111.2.S1_x_at11/117+2857135..2857454hypothetical protein
LOC_Os07g05930OsAffx.16111.2.S1_at11/117+2857135..2857454hypothetical protein
LOC_Os07g05940Os.50053.1.A1_at11/117+2868986..2871132viviparous-14, putative, expressed
LOC_Os07g05950Os.16763.1.S1_at3/117+2880672..2880902expressed protein
LOC_Os07g05960OsAffx.5226.1.S1_at11/117+2881339..2890947expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16111.2.S1_at--1094--1253Chr07:2857187..2857211 (25 bp)
AGATCTCATTAATAGAAGATCACGC
LOC_Os07g05930
OsAffx.16111.2.S1_at--934--2151Chr07:2857214..2857318 (25 bp)
ACACCGACATGAAGATTAGAACAGA
LOC_Os07g05930
OsAffx.16111.2.S1_at--416--1252Chr07:2857306..2857330 (25 bp)
AGATTAGAACAGACAAACCGGGATT
LOC_Os07g05930
OsAffx.16111.2.S1_at--561--10012Chr07:2857310..2857334 (25 bp)
TAGAACAGACAAACCGGGATTGAAG
LOC_Os07g05930
OsAffx.16111.2.S1_at--18--2611Chr07:2857321..2857345 (25 bp)
AACCGGGATTGAAGAATCAAGCCAT
LOC_Os07g05930
OsAffx.16111.2.S1_at--1156--5372Chr10:12119855..12120187 (25 bp)
GAAGAATCAAGCCATCGAACTCGAT
LOC_Os10g24310
OsAffx.16111.2.S1_at--1036--2652Chr10:12120171..12120195 (25 bp)
AAGCCATCGAACTCGATGAGATTGA
LOC_Os10g24310
OsAffx.16111.2.S1_at--885--6053Chr10:12120188..12120212 (25 bp)
GAGATTGATCTCAGCATTTGTTCTG
LOC_Os10g24310
OsAffx.16111.2.S1_at--878--6593Chr10:12120190..12120214 (25 bp)
GATTGATCTCAGCATTTGTTCTGAA
LOC_Os10g24310
OsAffx.16111.2.S1_at--1140--6414Chr10:12120194..12120218 (25 bp)
GATCTCAGCATTTGTTCTGAAGTTG
LOC_Os10g24310
OsAffx.16111.2.S1_at--303--4954Chr10:12120201..12120225 (25 bp)
GCATTTGTTCTGAAGTTGATTCCAT
LOC_Os10g24310
Target Sequence 
AGATCTCATTAATAGAAGATCACGCGGACACCGACATGAAGATTAGAACAGACAAACCGGGATTGAAGAATCAAGCCATC
GAACTCGATGAGATTGATCTCAGCATTTGTTCTGAAGTTGATTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16111.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis