Browse Element(s) Details


OsAffx.16146.2.S1_at

Description tigr:9631.m02782
TID=OsAffx.16146.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative potassium channel
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2812011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28090Os.52831.1.S1_at11/113+16130137..16132316Pectinesterase family protein, expressed
LOC_Os03g28100NANA3+16133247..16134642hypothetical protein
LOC_Os03g28110NANA3+16137629..16141894retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g28120OsAffx.16146.2.S1_at11/113+16142751..16145812hypothetical protein
LOC_Os03g28120Os.52782.1.S1_at1/113+16142751..16145812hypothetical protein
LOC_Os03g28130Os.45248.1.S1_at11/113+16150093..16151610F-box protein, putative, expressed
LOC_Os03g28140OsAffx.25265.2.S1_x_at10/113+16160784..16171511phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os03g28140OsAffx.6175.1.S1_at2/113+16160784..16171511phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042391biological_processregulation of membrane potential
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16146.2.S1_at--1043--7871Chr03:16145755..16145779 (25 bp)
GGTTTTGTGACGATGACTAGGATCT
LOC_Os03g28120
OsAffx.16146.2.S1_at--394--9471Chr03:16145733..16145757 (25 bp)
TCTGTGATGGTGATGTTGACTGTTG
LOC_Os03g28120
OsAffx.16146.2.S1_at--269--10751Chr03:16145718..16145742 (25 bp)
TTGACTGTTGGGAGTTCGTTGTGAT
LOC_Os03g28120
OsAffx.16146.2.S1_at--477--9391Chr03:16145703..16145727 (25 bp)
TCGTTGTGATTGATTTCGGAGGGCA
LOC_Os03g28120
OsAffx.16146.2.S1_at--1101--10291Chr03:16145690..16145714 (25 bp)
TTTCGGAGGGCAAAGCTTGGTTGAT
LOC_Os03g28120
OsAffx.16146.2.S1_at--981--2911Chr03:16145041..16145065 (25 bp)
AAGGAGAGGCTTCCAACACCTTGGT
LOC_Os03g28120
OsAffx.16146.2.S1_at--785--7911Chr03:16145034..16145058 (25 bp)
GGCTTCCAACACCTTGGTTCGAACA
LOC_Os03g28120
OsAffx.16146.2.S1_at--124--8571Chr03:16145020..16145044 (25 bp)
TGGTTCGAACACACCCTGAAAATGC
LOC_Os03g28120
OsAffx.16146.2.S1_at--906--5511Chr03:16145003..16145027 (25 bp)
GAAAATGCCATGGTTACTGCCCGAG
LOC_Os03g28120
OsAffx.16146.2.S1_at--576--9911Chr03:16144989..16145013 (25 bp)
TACTGCCCGAGAAATTTTGTTGGAC
LOC_Os03g28120
OsAffx.16146.2.S1_at--588--8431Chr03:16142959..16142983 (25 bp)
GGCCTAGTCGATGTTCGCAGTTCTA
LOC_Os03g28120
Target Sequence 
GGTTTTGTGACGATGACTAGGATCTGTGATGGTGATGTTGACTGTTGGGAGTTCGTTGTGATTGATTTCGGAGGGCAAAG
CTTGGTTGATTTTGGGGGCGACACAAGGAAAGGAGAGGCTTCCAACACCTTGGTTCGAACACACCCTGAAAATGCCATGG
TTACTGCCCGAGAAATTTTGTTGGACAAGTTTTTCAGGAGGAGGCGGCCTAGTCGATGTTCGCAGTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16146.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis