Browse Element(s) Details


OsAffx.16163.1.S1_x_at

Description tigr:9635.m00864
TID=OsAffx.16163.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AT3g10060T22K18_11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0904011/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09010Os.49506.1.S1_at11/117+4695537..4697831nodulin family protein, putative, expressed
LOC_Os07g09020Os.53826.1.S1_at11/117+4701278..4710817Argonaute-like protein At2g27880, putative, expressed
LOC_Os07g09030NANA7+4716943..4717257hypothetical protein
LOC_Os07g09040OsAffx.16163.1.S1_at11/117+4720067..4725266peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g09040OsAffx.16163.1.S1_x_at11/117+4720067..4725266peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g09050Os.51833.1.S1_x_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.3.S1_at11/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050Os.51833.2.S1_at10/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.1782.1.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09050OsAffx.27499.3.S1_x_at1/117+4727766..4731831exostosin family protein, putative, expressed
LOC_Os07g09060Os.1984.1.S1_at11/117+4732926..4739754methylmalonate-semialdehyde dehydrogenase, putative, expressed
LOC_Os07g09070OsAffx.16164.1.S1_at11/117+4742360..4743824hypothetical protein
LOC_Os07g09080NANA7+4748547..4750293retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16163.1.S1_x_at--480--9371Chr07:4724702..4724726 (25 bp)
TCGAGCGGCAGGGACGTTCTTGACG
LOC_Os07g09040
OsAffx.16163.1.S1_x_at--694--10551Chr07:4724718..4724742 (25 bp)
TTCTTGACGGGCTGGAGGCGCTCCG
LOC_Os07g09040
OsAffx.16163.1.S1_x_at--1104--971Chr07:4724766..4724790 (25 bp)
AGGAGATGATCTACCTCGGCTGGAT
LOC_Os07g09040
OsAffx.16163.1.S1_x_at--331--1311Chr07:4724769..4724793 (25 bp)
AGATGATCTACCTCGGCTGGATCAC
LOC_Os07g09040
OsAffx.16163.1.S1_x_at--621--9971Chr07:4724777..4724801 (25 bp)
TACCTCGGCTGGATCACGGCGTGGC
LOC_Os07g09040
OsAffx.16163.1.S1_x_at--77--3911Chr07:4724785..4724809 (25 bp)
CTGGATCACGGCGTGGCTGCAGCAC
LOC_Os07g09040
OsAffx.16163.1.S1_x_at--486--4631Chr07:4724852..4724876 (25 bp)
GCGATCATCGGCGACGAGACACCGG
LOC_Os07g09040
OsAffx.16163.1.S1_x_at--792--4071Chr07:4724922..4724946 (25 bp)
CGAGCAACGAGGTGGAGCTCTGCAA
LOC_Os07g09040
OsAffx.16163.1.S1_x_at--451--4651Chr07:4724957..4724981 (25 bp)
GCGTCATCGAGCTCGTCGTCGGAGA
LOC_Os07g09040
OsAffx.16163.1.S1_x_at--34--8371Chr07:4725026..4725050 (25 bp)
GGCGGGTGCACGAGCATCGGACGGC
LOC_Os07g09040
OsAffx.16163.1.S1_x_at--978--8391Chr07:4725048..4725072 (25 bp)
GGCCCAGATTGCTCCGCAGGCTGAG
LOC_Os07g09040
Target Sequence 
TCGAGCGGCAGGGACGTTCTTGACGGGCTGGAGGCGCTCCGGGACCGGTGGGCGGCCGACATGGAGGAGATGATCTACCT
CGGCTGGATCACGGCGTGGCTGCAGCACGACCTCCTCGTCCTCGACGGCGGCGAGGTCGGCACGCCGGCGGCGATCATCG
GCGACGAGACACCGGCGCAGCCGCGGCACAAGGGGGAGAAGGTGGTGGTCGCGGTGGCGCCGAGCAACGAGGTGGAGCTC
TGCAAGGCGGCGTCGGCGTCATCGAGCTCGTCGTCGGAGATGCGCGGCGCGGCGGAGCCGTCGTGCATGATGGGGTTCGT
CGCCGGCGGGTGCACGAGCATCGGACGGCCCAGATTGCTCCGCAGGCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16163.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis