Browse Element(s) Details


OsAffx.16167.1.S1_at

Description tigr:9635.m00883
TID=OsAffx.16167.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0921011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09190Os.6450.1.S1_at11/117+4819507..48229651-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os07g09200OsAffx.28358.1.S1_at11/117+4827210..4827892hypothetical protein
LOC_Os07g09210OsAffx.16167.1.S1_at11/117+4828650..4829408hypothetical protein
LOC_Os07g09220OsAffx.16168.1.S1_at11/117+4832264..4832932adenylate isopentenyltransferase 8, putative
LOC_Os07g09230Os.28943.1.S1_x_at1/117+4834922..4838164retrotransposon protein, putative, unclassified
LOC_Os07g09240NANA7+4838549..4843930retrotransposon protein, putative, unclassified
LOC_Os07g09250OsAffx.16169.1.S1_at11/117+4848566..4849210hypothetical protein
LOC_Os07g09260NANA7+4850081..4850729NA
LOC_Os07g09270OsAffx.16170.1.S1_at11/117+4853959..4855313hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16167.1.S1_at--696--5351Chr07:4828811..4828835 (25 bp)
GAAGATCTACATTCAAGCCAGGGAA
LOC_Os07g09210
OsAffx.16167.1.S1_at--173--951Chr07:4828847..4828871 (25 bp)
AGGACATGTGTTCAAGTCCCGCCAC
LOC_Os07g09210
OsAffx.16167.1.S1_at--488--2331Chr07:4828884..4828908 (25 bp)
AAAGAGGCCGCACTCCAGGATGCGT
LOC_Os07g09210
OsAffx.16167.1.S1_at--123--9351Chr07:4828908..4828932 (25 bp)
TCGCGTGAGGCATTCATGCGTCTAT
LOC_Os07g09210
OsAffx.16167.1.S1_at--577--511Chr07:4828947..4828971 (25 bp)
ATCGAGGTTGCGAGTACTCCGTTCT
LOC_Os07g09210
OsAffx.16167.1.S1_at--745--6731Chr07:4828967..4828991 (25 bp)
GTTCTTTCTACATCCATTCCGTGAA
LOC_Os07g09210
OsAffx.16167.1.S1_at--330--631Chr07:4829115..4829139 (25 bp)
ATGCTTCGGTCAAAGATCGCCGGCT
LOC_Os07g09210
OsAffx.16167.1.S1_at--203--5871Chr07:4829145..4829169 (25 bp)
GAGCGGTACAACCACCTTGCTAAAG
LOC_Os07g09210
OsAffx.16167.1.S1_at--193--2171Chr07:4829173..4829197 (25 bp)
ACACCACTCGTGGACAACTATTGGA
LOC_Os07g09210
OsAffx.16167.1.S1_at--537--2691Chr07:4829205..4829229 (25 bp)
AAGCTTCACCTCCAGTGGTATTTTC
LOC_Os07g09210
OsAffx.16167.1.S1_at--217--8571Chr07:4829220..4829244 (25 bp)
TGGTATTTTCGAACCCCATCTCAAG
LOC_Os07g09210
Target Sequence 
GAAGATCTACATTCAAGCCAGGGAAGAGAAGTGTCAAGGACATGTGTTCAAGTCCCGCCACCTTCGAGCCAACAAAGAGG
CCGCACTCCAGGATGCGTCGCGTGAGGCATTCATGCGTCTATGTAAGATCTACAGCATCGAGGTTGCGAGTACTCCGTTC
TTTCTACATCCATTCCGTGAATGCGGTGACCGCCGCTGCCATATTCGGAAATTTAGGGGCTTTGAGGAGCAGTCGCCCAT
CCACTTCTCCATGTGGATGTGGGCTGCAGACGAGGCCTATGAGGAGGCCTTAGAGGAATTAGATATGCTTCGGTCAAAGA
TCGCCGGCTGGGAGGAGCGGTACAACCACCTTGCTAAAGAACACACCACTCGTGGACAACTATTGGAAGCAATCAAGCTT
CACCTCCAGTGGTATTTTCGAACCCCATCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis