Browse Element(s) Details


OsAffx.16186.1.S1_at

Description tigr:9635.m00966
TID=OsAffx.16186.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1002011/11hypothetical protein
LOC_Os12g216601/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09980NANA7+5321425..5321814hypothetical protein
LOC_Os07g09990OsAffx.17842.1.S1_at4/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09990OsAffx.31892.2.S1_at2/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09990OsAffx.31892.2.S1_x_at1/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g10000OsAffx.28373.1.S1_at11/117+5338209..5339504hypothetical protein
LOC_Os07g10010NANA7+5340865..5343418hypothetical protein
LOC_Os07g10020OsAffx.16186.1.S1_at11/117+5345130..5346712hypothetical protein
LOC_Os07g10030OsAffx.28375.1.S1_at11/117+5347789..5351839hypothetical protein
LOC_Os07g10030OsAffx.28375.1.S1_s_at1/117+5347789..5351839hypothetical protein
LOC_Os07g10040OsAffx.16187.1.S1_at10/117+5352874..5354055retrotransposon protein, putative, unclassified
LOC_Os07g10050NANA7+5368122..5373825retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16186.1.S1_at--633--2591Chr07:5346154..5346178 (25 bp)
AACGATCGTCATCGACATCGTTCTC
LOC_Os07g10020
OsAffx.16186.1.S1_at--915--9491Chr07:5346175..5346199 (25 bp)
TCTCCTTCTCTCAGCAGGGATAACA
LOC_Os07g10020
OsAffx.16186.1.S1_at--6--7671Chr07:5346191..5346215 (25 bp)
GGGATAACACTACTCACTGACGACA
LOC_Os07g10020
OsAffx.16186.1.S1_at--694--6211Chr07:5346260..5346284 (25 bp)
GAGGCGCCCCTAACGAAGATCGAGA
LOC_Os07g10020
OsAffx.16186.1.S1_at--446--1271Chr07:5346276..5346300 (25 bp)
AGATCGAGACCGGTGGGCCCCTAGT
LOC_Os07g10020
OsAffx.16186.1.S1_at--937--6032Chr07:5346356..5346380 (25 bp)
GAGATCGAAATTCCCAATCTCCCGA
LOC_Os07g10020
OsAffx.16186.1.S1_at--201--6191Chr07:5346395..5346419 (25 bp)
GAGGACACAATCGTCGTTCGAGAAG
LOC_Os07g10020
OsAffx.16186.1.S1_at--929--531Chr07:5346517..5346541 (25 bp)
ATCCCAGGGAGTCAGTGCAGAGCAT
LOC_Os07g10020
OsAffx.16186.1.S1_at--191--5312Chr12:12171569..12171824 (25 bp)
GAAGTTCCAACCAGGCGCAATCGAG
LOC_Os12g21660
OsAffx.16186.1.S1_at--651--2731Chr07:5346626..5346650 (25 bp)
AAGAATTTCCGCAAGTCTACTCCAC
LOC_Os07g10020
OsAffx.16186.1.S1_at--885--9211Chr07:5346646..5346670 (25 bp)
TCCACAATCCTCTATACTGCGGATG
LOC_Os07g10020
Target Sequence 
AACGATCGTCATCGACATCGTTCTCCTTCTCTCAGCAGGGATAACACTACTCACTGACGACACCGTCACCGCTCTCCTTC
GCGACGAGGAAGGAACGATGGTCGAGGAGGCGCCCCTAACGAAGATCGAGACCGGTGGGCCCCTAGTGACCGCCGCAACG
ACATCAATAACGACAACCAACGAGATCAGGGGGCTAATCGCCGAGATCGAAATTCCCAATCTCCCGACCCCGGTCGAGAT
CGAGGACACAATCGTCGTTCGAGAAGCCGGGCCCCTGAGCCAAGCGACTCCTCATCCTCATCTTCGTCATCTTCTTCGTC
GGATCGGCCTCCCCGACGACGTCATGACCGCGGGCTGCCTTCCATCCCAGGGAGTCAGTGCAGAGCATTCACACCCGCAC
TCCGGGATGTGCGATGGCCCGAGAAGTTCCAACCAGGCGCAATCGAGAAATACGATGGAAGCACAGACCCAGAAGAATTT
CCGCAAGTCTACTCCACAATCCTCTATACTGCGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis