Browse Element(s) Details


OsAffx.16206.1.S1_at

Description tigr:9635.m01074
TID=OsAffx.16206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF260919 anthocyanin 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1102011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11000Os.50928.1.S1_at11/117+6034377..6042702expressed protein
LOC_Os07g11010Os.2220.1.S1_at11/117+6049606..6058815Kinase associated protein phosphatase, putative, expressed
LOC_Os07g11020OsAffx.16206.1.S1_at11/117+6061189..6067617Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g11020Os.52782.1.S1_at1/117+6061189..6067617Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g11030Os.47463.1.S1_x_at6/117+6070566..6075530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11030Os.14491.2.S1_x_at5/117+6070566..6075530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11040NANA7+6077124..6080429transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11050OsAffx.16207.1.S1_at11/117+6088292..6089335adenylate isopentenyltransferase 5, putative

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009813biological_processflavonoid biosynthesis
GO:0009957biological_processepidermal cell fate specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16206.1.S1_at--324--5931Chr07:6066284..6066308 (25 bp)
GAGCATCCTGATGATTGTTCCCAGT
LOC_Os07g11020
OsAffx.16206.1.S1_at--760--8791Chr07:6066299..6066323 (25 bp)
TGTTCCCAGTAGTCACTGCAGTTAC
LOC_Os07g11020
OsAffx.16206.1.S1_at--286--2311Chr07:6066357..6066381 (25 bp)
AAAGGCGCAAGTGGATGCCATCCAA
LOC_Os07g11020
OsAffx.16206.1.S1_at--1147--2731Chr07:6066937..6066960 (24 bp)
AAGAAGTGAATCCTACCCGTATCCA
LOC_Os07g11020
OsAffx.16206.1.S1_at--954--9951Chr07:6066949..6067159 (25 bp)
TACCCGTATCCACCGATGGACAAGG
LOC_Os07g11020
OsAffx.16206.1.S1_at--855--891Chr07:6067157..6067181 (25 bp)
AGGCGTCGATACTAGGCGACACGAT
LOC_Os07g11020
OsAffx.16206.1.S1_at--386--5391Chr07:6067191..6067215 (25 bp)
GAAGCAGCTAAGGAACCGCATACAA
LOC_Os07g11020
OsAffx.16206.1.S1_at--294--9051Chr07:6067379..6067403 (25 bp)
TGCAGGTGTCCATCATCGAGAGCGA
LOC_Os07g11020
OsAffx.16206.1.S1_at--593--8851Chr07:6067466..6067490 (25 bp)
TGATGCAGGCGATGCAGGAGCTCCA
LOC_Os07g11020
OsAffx.16206.1.S1_at--1065--1591Chr07:6067544..6067568 (25 bp)
AGCTGCGCGCCAAGGTCGTCGTTAT
LOC_Os07g11020
OsAffx.16206.1.S1_at--250--7811Chr07:6067557..6067581 (25 bp)
GGTCGTCGTTATGATCCTGATCTGC
LOC_Os07g11020
Target Sequence 
GAGCATCCTGATGATTGTTCCCAGTAGTCACTGCAGTTACAGGGGAGCAGAAACACCTGAATCAAGGGGCGGGAAAGGCG
CAAGTGGATGCCATCCAAGAAGTGAATCCTACCCGTATCCACCGATGGACAAGGCGTCGATACTAGGCGACACGATCGAG
TACGTGAAGCAGCTAAGGAACCGCATACAAGAGCTCGAGTCGTCGTCGTCGTCGTCACGAGCAGCCGCCCGGGCGCCATC
GGCGGCGGCCGCCGGGAGGCGGAGGAAGAGATCCGCCGCCGCCGCCACTGCCACGGCGGCGGAAGGGATGAGCAGCAGCA
ATGGCCGCAATGGCGGCGAGGCGGCGGAGGTGGTGCAGGTGTCCATCATCGAGAGCGACGCGCTGCTGGAGCTCCGGTGC
GGTTGCGGCGGCGGCGGCGGCGGTGTGGTGCTGCTCCGGGTGATGCAGGCGATGCAGGAGCTCCAGCTGGAGGTCACCGC
CGTCCAGGCCTCGTGCGCCGGTGGCGAGCTGCTCGCCGAGCTGCGCGCCAAGGTCGTCGTTATGATCCTGATCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis