Browse Element(s) Details


OsAffx.16233.1.S1_x_at

Description tigr:9635.m01255
TID=OsAffx.16233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1276011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12720NANA7+7267190..7267696hypothetical protein
LOC_Os07g12730Os.5957.1.S1_at10/117+7271198..7273025expressed protein
LOC_Os07g12740Os.40360.1.S1_at9/117+7276824..7279565hypothetical protein
LOC_Os07g12740Os.40360.1.S1_x_at8/117+7276824..7279565hypothetical protein
LOC_Os07g12740Os.40855.5.S1_x_at3/117+7276824..7279565hypothetical protein
LOC_Os07g12750NANA7+7288259..7288909hypothetical protein
LOC_Os07g12760OsAffx.16233.1.S1_x_at11/117+7292031..7292345hypothetical protein
LOC_Os07g12770Os.17662.1.S1_at11/117+7308692..7311352amino acid transporter family protein, putative, expressed
LOC_Os07g12780Os.27806.1.S1_at11/117+7311856..7313047expressed protein
LOC_Os07g12790OsAffx.5305.1.S1_at11/117+7315383..7315888expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16233.1.S1_x_at--589--4492Chr05:17941225..17941246 (22 bp)
GCCGACCCCTTTGGCGTGGAGCTAA
NONE
OsAffx.16233.1.S1_x_at--82--7533Chr10:10668207..10668230 (24 bp)
GTGGAGCTAATGCACGTGTTGATTA
NONE
OsAffx.16233.1.S1_x_at--765--5091Chr07:7292253..7292277 (25 bp)
GCACGTGTTGATTAACGACACTGAC
LOC_Os07g12760
OsAffx.16233.1.S1_x_at--560--9791Chr07:7292241..7292265 (25 bp)
TAACGACACTGACATCGATGACAAT
LOC_Os07g12760
OsAffx.16233.1.S1_x_at--210--9391Chr07:7292227..7292251 (25 bp)
TCGATGACAATGTCCGGCGACCGGA
LOC_Os07g12760
OsAffx.16233.1.S1_x_at--164--8551Chr07:7292173..7292197 (25 bp)
TGGAGAGTTGTGACATCACGGAGCT
LOC_Os07g12760
OsAffx.16233.1.S1_x_at--954--6051Chr07:7292169..7292193 (25 bp)
GAGTTGTGACATCACGGAGCTGCTC
LOC_Os07g12760
OsAffx.16233.1.S1_x_at--719--6631Chr07:7292167..7292191 (25 bp)
GTTGTGACATCACGGAGCTGCTCCT
LOC_Os07g12760
OsAffx.16233.1.S1_x_at--757--8712Chr10:10668066..10668090 (25 bp)
TGTCCCGTTCTCCTGCCGTGTCAAT
NONE
OsAffx.16233.1.S1_x_at--141--3854Chr11:5302319..5302342 (24 bp)
CTGCTTCGCAATTGCAAGGGAGAGG
NONE
OsAffx.16233.1.S1_x_at--857--3271Chr07:7292063..7292087 (25 bp)
CAACAATTTGCATATAGAGATGGAG
LOC_Os07g12760
Target Sequence 
GCCGACCCCTTTGGCGTGGAGCTAATGCACGTGTTGATTAACGACACTGACATCGATGACAATGTCCGGCGACCGGAGAA
CACGGTGCCCGGCGCGTGGGCGACGGTGGAGAGTTGTGACATCACGGAGCTGCTCCTCGCCAGCCTCAACGCCGGTGTCC
CGTTCTCCTGCCGTGTCAATGGCAGCTGCTTCGCAATTGCAAGGGAGAGGATCAAACAACAATTTGCATATAGAGATGGA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16233.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis