Browse Element(s) Details


OsAffx.16246.1.S1_at

Description gb:NM_186777.1
DB_XREF= gi:34900639
GEN=P0523A04.17
TID=OsAffx.16246.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome1, P0480C01.6 (P0523A04.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1357011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13550OsAffx.28431.1.S1_s_at11/117+7761734..7766059hypothetical protein
LOC_Os07g13550OsAffx.28431.2.S1_at6/117+7761734..7766059hypothetical protein
LOC_Os07g13560OsAffx.25367.1.S1_at2/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560OsAffx.13241.1.S1_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560Os.51887.1.S1_x_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13570OsAffx.16246.1.S1_at11/117+7783891..7784409hypothetical protein
LOC_Os07g13580Os.24085.1.S1_x_at11/117+7785085..7787103Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os07g13590Os.26753.1.S1_at11/117+7788517..7793327expressed protein
LOC_Os07g13600Os.21424.1.S1_at8/117+7794294..7795285expressed protein
LOC_Os07g13600OsAffx.9136.1.S1_x_at1/117+7794294..7795285expressed protein
LOC_Os07g13610OsAffx.19542.3.S1_x_at3/117+7806884..7810792retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16246.1.S1_at--713--3931Chr07:7784349..7784373 (25 bp)
CGGCGTGGAGCTCGTGGCGAAGGTG
LOC_Os07g13570
OsAffx.16246.1.S1_at--684--4591Chr07:7784333..7784357 (25 bp)
GCGAAGGTGGTGGTAGCGGCTGGAC
LOC_Os07g13570
OsAffx.16246.1.S1_at--503--2151Chr07:7784301..7784325 (25 bp)
ACAGCACAGTGGTTGGTAGACGGCA
LOC_Os07g13570
OsAffx.16246.1.S1_at--176--10851Chr07:7784289..7784313 (25 bp)
TTGGTAGACGGCACTGCCGGCTGCT
LOC_Os07g13570
OsAffx.16246.1.S1_at--1033--8451Chr07:7784192..7784216 (25 bp)
TGGCCATCGGCAGTAGTGGCTGCAA
LOC_Os07g13570
OsAffx.16246.1.S1_at--398--3551Chr07:7784188..7784212 (25 bp)
CATCGGCAGTAGTGGCTGCAATGGT
LOC_Os07g13570
OsAffx.16246.1.S1_at--746--5071Chr07:7784113..7784137 (25 bp)
GCACCTGGCCGGTGCGGCAGTGATT
LOC_Os07g13570
OsAffx.16246.1.S1_at--394--3611Chr07:7784070..7784094 (25 bp)
CTTGGCGTAGAGAGGCACGGCTGTT
LOC_Os07g13570
OsAffx.16246.1.S1_at--478--8251Chr07:7784057..7784081 (25 bp)
GGCACGGCTGTTGGCAGTGGAGGTC
LOC_Os07g13570
OsAffx.16246.1.S1_at--267--2151Chr07:7783977..7784001 (25 bp)
ACAGCCGATGGCAGGAAACCGGACT
LOC_Os07g13570
OsAffx.16246.1.S1_at--21--6211Chr07:7783971..7783995 (25 bp)
GATGGCAGGAAACCGGACTGGCGCG
LOC_Os07g13570
Target Sequence 
CGGCGTGGAGCTCGTGGCGAAGGTGGTGGTAGCGGCTGGACGATGGCGACAGCACAGTGGTTGGTAGACGGCACTGCCGG
CTGCTGTGGCAACGGGGCGCACTCACGGCGGCGACAACGGCGCGGAGCTCGTGGCGACGGTCGCGGTAGCGGCGAGGTGG
CCATCGGCAGTAGTGGCTGCAATGGTGGTGAGGCATGGCGGTCTCGGAAGGCTAGCCGGGGGCGTGGCAGACGGCCGCAC
CTGGCCGGTGCGGCAGTGATTGGAGGGGTCGGAGGCCGGCTTGGCGTAGAGAGGCACGGCTGTTGGCAGTGGAGGTCGGC
AAGGCGCGAGAGGCATGGCCGGTGGCAAGGAGGCCGGCATGGCGTGAGAGGCACAGCCGATGGCAGGAAACCGGACTGGC
GCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis