Browse Element(s) Details


OsAffx.16339.1.S1_s_at

Description tigr:9635.m01981
TID=OsAffx.16339.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2011011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19560Os.16358.1.S1_at11/117+11590646..11595170Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os07g19570OsAffx.5380.1.S1_at11/117+11596133..11596492hypothetical protein
LOC_Os07g19580NANA7+11597581..11599458retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19590NANA7+11599977..11602270hypothetical protein
LOC_Os07g19594OsAffx.20689.1.A1_x_at1/117+11603236..11610359retrotransposon protein, putative, unclassified
LOC_Os07g20100OsAffx.5382.1.S1_at11/117+11613954..11614678expressed protein
LOC_Os07g20110OsAffx.16339.1.S1_s_at11/117+11617440..11619279expressed protein
LOC_Os07g20120OsAffx.16340.1.S1_at11/117+11621339..11621578hypothetical protein
LOC_Os07g20130Os.53221.1.S1_at11/117+11625713..11626690MATH domain containing protein, expressed
LOC_Os07g20140OsAffx.16341.1.S1_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20140OsAffx.16341.1.S1_x_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20150OsAffx.16342.1.S1_at11/117+11630345..11634963expressed protein
LOC_Os07g20150Os.6134.1.S1_at7/117+11630345..11634963expressed protein
LOC_Os07g20160NANA7+11635585..11636241hypothetical protein
LOC_Os07g20170Os.46559.1.S1_at2/117+11641581..11644132Cofilin/tropomyosin-type actin-binding protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16339.1.S1_s_at--700--6651Chr07:11617690..11617714 (25 bp)
GTTGATCATTCTGTGCTAGAATCAT
LOC_Os07g20110
OsAffx.16339.1.S1_s_at--703--371Chr07:11617713..11617737 (25 bp)
ATCAAGCATGCTTAATCTAGGAAAG
LOC_Os07g20110
OsAffx.16339.1.S1_s_at--780--1071Chr07:11617755..11617779 (25 bp)
AGTGGAAATTCTAGCCAAGGCTACC
LOC_Os07g20110
OsAffx.16339.1.S1_s_at--972--9971Chr07:11617766..11617790 (25 bp)
TAGCCAAGGCTACCAAGGATGTACC
LOC_Os07g20110
OsAffx.16339.1.S1_s_at--769--7991Chr07:11617782..11617806 (25 bp)
GGATGTACCCGAGGAACTGGAAACT
LOC_Os07g20110
OsAffx.16339.1.S1_s_at--498--9951Chr07:11617787..11617811 (25 bp)
TACCCGAGGAACTGGAAACTATTGA
LOC_Os07g20110
OsAffx.16339.1.S1_s_at--988--1411Chr07:11617861..11617885 (25 bp)
AGAACTCGACAAGATAACGGTGGGA
LOC_Os07g20110
OsAffx.16339.1.S1_s_at--1027--4991Chr07:11618257..11618552 (25 bp)
GCAAGGTCAAGGAACGGATAGGTCT
LOC_Os07g20110
OsAffx.16339.1.S1_s_at--1008--3171Chr07:11618537..11618559 (23 bp)
CAAGGAACGGATAGGTCTGTGAAAG
LOC_Os07g20110
OsAffx.16339.1.S1_s_at--240--8551Chr07:11618569..11619020 (25 bp)
TGGAGACAACTCCAGGTCCTACTCA
LOC_Os07g20110
OsAffx.16339.1.S1_s_at--132--3971Chr07:11619008..11619031 (24 bp)
CCAGGTCCTACTCAGTACCCAAGGG
LOC_Os07g20110
Target Sequence 
GTTGATCATTCTGTGCTAGAATCATCAAGCATGCTTAATCTAGGAAAGCAAGATGAACCTGACAAAGTGGAAATTCTAGC
CAAGGCTACCAAGGATGTACCCGAGGAACTGGAAACTATTGAAACAAAATCCATGAATTCAGTCAAGAATACAAGCAAGA
ATGTTGGGAAGAGAACTCGACAAGATAACGGTGGGAGTAAAATAAAGAAATCCTCTGATCATAATCTGCAAGGTCAAGGA
ACGGATAGGTCTGTGAAAGGAAGGACAATGGAGACAACTCCAGGTCCTACTCAGTACCCAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16339.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis