Browse Element(s) Details


OsAffx.16341.1.S1_x_at

Description tigr:9635.m01984
TID=OsAffx.16341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2014011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19594OsAffx.20689.1.A1_x_at1/117+11603236..11610359retrotransposon protein, putative, unclassified
LOC_Os07g20100OsAffx.5382.1.S1_at11/117+11613954..11614678expressed protein
LOC_Os07g20110OsAffx.16339.1.S1_s_at11/117+11617440..11619279expressed protein
LOC_Os07g20120OsAffx.16340.1.S1_at11/117+11621339..11621578hypothetical protein
LOC_Os07g20130Os.53221.1.S1_at11/117+11625713..11626690MATH domain containing protein, expressed
LOC_Os07g20140OsAffx.16341.1.S1_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20140OsAffx.16341.1.S1_x_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20150OsAffx.16342.1.S1_at11/117+11630345..11634963expressed protein
LOC_Os07g20150Os.6134.1.S1_at7/117+11630345..11634963expressed protein
LOC_Os07g20160NANA7+11635585..11636241hypothetical protein
LOC_Os07g20170Os.46559.1.S1_at2/117+11641581..11644132Cofilin/tropomyosin-type actin-binding protein, expressed
LOC_Os07g20180OsAffx.28523.1.S1_at11/117+11645726..11646654hypothetical protein
LOC_Os07g20190NANA7+11652071..11653820retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16341.1.S1_x_at--818--7831Chr07:11628660..11628684 (25 bp)
GGTAGCACGGAGACGTTCAGGTTCT
LOC_Os07g20140
OsAffx.16341.1.S1_x_at--661--10011Chr07:11628658..11628682 (25 bp)
TAGCACGGAGACGTTCAGGTTCTGC
LOC_Os07g20140
OsAffx.16341.1.S1_x_at--1107--1471Chr07:11628657..11628681 (25 bp)
AGCACGGAGACGTTCAGGTTCTGCA
LOC_Os07g20140
OsAffx.16341.1.S1_x_at--1--5111Chr07:11628656..11628680 (25 bp)
GCACGGAGACGTTCAGGTTCTGCAT
LOC_Os07g20140
OsAffx.16341.1.S1_x_at--216--8351Chr07:11628624..11628648 (25 bp)
GGCGGCACATTCACCAACATCCACA
LOC_Os07g20140
OsAffx.16341.1.S1_x_at--203--591Chr07:11628606..11628630 (25 bp)
ATCCACACCGAGCTGCCCGGAAGGA
LOC_Os07g20140
OsAffx.16341.1.S1_x_at--86--9211Chr07:11628605..11628629 (25 bp)
TCCACACCGAGCTGCCCGGAAGGAG
LOC_Os07g20140
OsAffx.16341.1.S1_x_at--1129--4071Chr07:11628598..11628622 (25 bp)
CGAGCTGCCCGGAAGGAGGGAAGGC
LOC_Os07g20140
OsAffx.16341.1.S1_x_at--792--5291Chr07:11628579..11628603 (25 bp)
GAAGGCTACGAGAATGAAGCTTCTC
LOC_Os07g20140
OsAffx.16341.1.S1_x_at--1157--5951Chr07:11628570..11628594 (25 bp)
GAGAATGAAGCTTCTCTCCGTCGAC
LOC_Os07g20140
OsAffx.16341.1.S1_x_at--666--7251Chr07:11628543..11628567 (25 bp)
GTCCAACTACGAGTCTACGACGACG
LOC_Os07g20140
Target Sequence 
GGTAGCACGGAGACGTTCAGGTTCTGCATTGACAGGGGCGGCACATTCACCAACATCCACACCGAGCTGCCCGGAAGGAG
GGAAGGCTACGAGAATGAAGCTTCTCTCCGTCGACCCGTCCAACTACGAGTCTACGACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16341.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis