Browse Element(s) Details


OsAffx.16451.1.S1_at

Description gb:NM_187239.1
DB_XREF= gi:34901563
TID=OsAffx.16451.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0404G11.29 (P0404G11.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2832011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28260Os.46016.1.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.4.S1_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.3.S1_x_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.24715.2.A1_a_at11/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28260Os.25500.1.S1_at10/117+16510681..165201762-phosphoglycerate kinase, putative, expressed
LOC_Os07g28280Os.7517.1.S1_at10/117+16520760..16522328expressed protein
LOC_Os07g28280OsAffx.22334.1.S1_at4/117+16520760..16522328expressed protein
LOC_Os07g28290OsAffx.22333.1.S1_at6/117+16524705..16526475hypothetical protein
LOC_Os07g28300OsAffx.28643.1.S1_at11/117+16527012..16529952Leucine Rich Repeat family protein
LOC_Os07g28310NANA7+16530903..16532984retrotransposon protein, putative, unclassified
LOC_Os07g28320OsAffx.16451.1.S1_x_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28320OsAffx.16451.1.S1_at11/117+16533261..16533659hypothetical protein
LOC_Os07g28330NANA7+16533868..16534731hypothetical protein
LOC_Os07g28340NANA7+16543049..16544307retrotransposon protein, putative, unclassified
LOC_Os07g28350NANA7+16547938..16548285hypothetical protein
LOC_Os07g28360NANA7+16549629..16553867retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16451.1.S1_at--1067--4732Chr07:16533291..16533315 (25 bp)
GCTGAACGATTTGCTATCTTAACAA
LOC_Os07g28320
OsAffx.16451.1.S1_at--885--5431Chr07:16533294..16533318 (25 bp)
GAACGATTTGCTATCTTAACAACGT
LOC_Os07g28320
OsAffx.16451.1.S1_at--943--10471Chr07:16533309..16533333 (25 bp)
TTAACAACGTTTACTGAATCGGCCG
LOC_Os07g28320
OsAffx.16451.1.S1_at--59--2191Chr07:16533312..16533336 (25 bp)
ACAACGTTTACTGAATCGGCCGCGG
LOC_Os07g28320
OsAffx.16451.1.S1_at--1034--2571Chr07:16533314..16533338 (25 bp)
AACGTTTACTGAATCGGCCGCGGAG
LOC_Os07g28320
OsAffx.16451.1.S1_at--209--1891Chr07:16533315..16533339 (25 bp)
ACGTTTACTGAATCGGCCGCGGAGG
LOC_Os07g28320
OsAffx.16451.1.S1_at--1009--6611Chr07:16533393..16533417 (25 bp)
GTTGTACAACCTGCTAAATCGGAAG
LOC_Os07g28320
OsAffx.16451.1.S1_at--793--2611Chr07:16533400..16533424 (25 bp)
AACCTGCTAAATCGGAAGTGTCTGT
LOC_Os07g28320
OsAffx.16451.1.S1_at--1128--4831Chr07:16533405..16533429 (25 bp)
GCTAAATCGGAAGTGTCTGTTGAAC
LOC_Os07g28320
OsAffx.16451.1.S1_at--591--2571Chr07:16533409..16533433 (25 bp)
AATCGGAAGTGTCTGTTGAACCGGC
LOC_Os07g28320
OsAffx.16451.1.S1_at--312--10717Chr07:16533493..16533517 (25 bp)
TTGCGTCGGCCGATTCACAACCTGC
LOC_Os07g28320
Target Sequence 
GCTGAACGATTTGCTATCTTAACAACGTTTACTGAATCGGCCGCGGAGGCTGTTGCCTTGGTGGCGTTTGCTGGACTGGT
TGCACAACTTGTTGCTGGATTGGTTGTACAACCTGCTAAATCGGAAGTGTCTGTTGAACCGGCTGCTGCTGTATTGGATC
AACAGCAGGTTGAGGCGGCAGAAACATGGCAGCAACTTGATCTTGCGTCGGCCGATTCACAACCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis