Browse Element(s) Details


OsAffx.16627.1.S1_at

Description tigr:9635.m03898
TID=OsAffx.16627.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g391209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed
LOC_Os07g39080OsAffx.16624.1.S1_x_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39080OsAffx.16624.1.S1_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39090OsAffx.16625.1.S1_at11/117+23423711..23429192hypothetical protein
LOC_Os07g39100OsAffx.16626.1.S1_at11/117+23430025..23430687hypothetical protein
LOC_Os07g39110Os.55217.1.S1_at11/117+23431681..23433157expressed protein
LOC_Os07g39120Os.25190.1.A1_x_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120Os.25190.1.A1_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120OsAffx.16627.1.S1_at9/117+23436812..23439851hypothetical protein
LOC_Os07g39130NANA7+23441148..23441426hypothetical protein
LOC_Os07g39140OsAffx.28819.1.S1_at11/117+23442507..23442845hypothetical protein
LOC_Os07g39150OsAffx.32166.1218.S1_x_at9/117+23454664..23456106hypothetical protein
LOC_Os07g39170NANA7+23461676..23466848retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16627.1.S1_at--298--2231Chr07:23439656..23439680 (25 bp)
ACAAGTACGTGATCCGATCCTCGAT
LOC_Os07g39120
OsAffx.16627.1.S1_at--949--5111Chr07:23439620..23439644 (25 bp)
GCACAGTGAGATCAAGTCTTCCGAT
LOC_Os07g39120
OsAffx.16627.1.S1_at--356--4751Chr07:23439592..23439616 (25 bp)
GCTGATCCTCGGTATGTTTTGTGCA
LOC_Os07g39120
OsAffx.16627.1.S1_at--724--7171NONE
GTCTGATAGAAGTCCCGGTTCGAAT
NONE
OsAffx.16627.1.S1_at--837--6831Chr07:23438127..23438151 (25 bp)
GTTTCTCTACCAGTGATCCTGTAGT
LOC_Os07g39120
OsAffx.16627.1.S1_at--86--5291Chr07:23438095..23438119 (25 bp)
GAAGGTAGAGACGACGCCACCCCTG
LOC_Os07g39120
OsAffx.16627.1.S1_at--795--2491Chr07:23438046..23438070 (25 bp)
AACAGTGCTTGATGAGCCTCGAGCT
LOC_Os07g39120
OsAffx.16627.1.S1_at--528--5871Chr07:23438033..23438057 (25 bp)
GAGCCTCGAGCTGGATATCAACCGT
LOC_Os07g39120
OsAffx.16627.1.S1_at--1057--231Chr07:23438019..23438043 (25 bp)
ATATCAACCGTGACCAGGGTGCCTC
LOC_Os07g39120
OsAffx.16627.1.S1_at--754--3551NONE
CATCAACTCTTGCTAGCTTTATCGC
NONE
OsAffx.16627.1.S1_at--453--531Chr07:23436865..23437072 (25 bp)
ATCGCTAGTTTTTGGAAGTTGCTCA
LOC_Os07g39120
Target Sequence 
ACAAGTACGTGATCCGATCCTCGATGTCCCTTTCCTGCACAGTGAGATCAAGTCTTCCGATCTGGCTGATCCTCGGTATG
TTTTGTGCAGGAGATGACCTCAGGATCAGCACTGACCCTACTGCGATGGTCGAGCTCATAGAGTACTACCACAAGATGGG
TCTGATAGAAGTCCCGGTTCGAATAGGAACCGGGATTATTGTGGATTTTGGACGACCGACCAAAAATGGTTTCTCTACCA
GTGATCCTGTAGTTGACTGCGAAGGTAGAGACGACGCCACCCCTGATCGCGCTGATGAGCAGGTGAAGAAACAGTGCTTG
ATGAGCCTCGAGCTGGATATCAACCGTGACCAGGGTGCCTCATCAACTCTTGCTAGCTTTATCGCTAGTTTTTGGAAGTT
GCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis