Browse Element(s) Details


OsAffx.16658.1.S1_at

Description tigr:9635.m04075
TID=OsAffx.16658.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4077011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40730Os.50618.1.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.3.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_x_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40740Os.53364.1.S1_at11/117+24415688..24417746Heparanase-like protein 1 precursor, putative, expressed
LOC_Os07g40750Os.53545.1.S1_at11/117+24418192..24420620pentatricopeptide, putative, expressed
LOC_Os07g40760OsAffx.32289.1.S1_at1/117+24421050..24426782transposon protein, putative, Mutator sub-class
LOC_Os07g40770OsAffx.16658.1.S1_at11/117+24427608..24431841expressed protein
LOC_Os07g40770Os.46451.1.S1_at1/117+24427608..24431841expressed protein
LOC_Os07g40780OsAffx.16659.1.S1_at11/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40780OsAffx.27050.1.S1_x_at1/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40790Os.54224.1.S1_x_at11/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.54224.1.S1_at10/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.47385.1.S1_at4/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40800Os.48371.1.S1_at9/117+24449939..24453879expressed protein
LOC_Os07g40800Os.57429.1.S1_s_at1/117+24449939..24453879expressed protein
LOC_Os07g40810OsAffx.16660.1.S1_at11/117+24454435..24458215NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16658.1.S1_at--767--7971Chr07:24428481..24428505 (25 bp)
GGATGCAGAAGATCTCACCCAAGAA
LOC_Os07g40770
OsAffx.16658.1.S1_at--88--7851Chr07:24428443..24428467 (25 bp)
GGTACCAAATAACTGGCATGCTTGA
LOC_Os07g40770
OsAffx.16658.1.S1_at--1069--2671Chr07:24428408..24428432 (25 bp)
AAGCGTCGGTCTTGCATTGAGCAGG
LOC_Os07g40770
OsAffx.16658.1.S1_at--56--10771Chr07:24428392..24428416 (25 bp)
TTGAGCAGGCAGCTATCCAACAAAT
LOC_Os07g40770
OsAffx.16658.1.S1_at--57--2271Chr07:24428371..24428395 (25 bp)
AAATCCAGGAACTAGAGGCTCAGGT
LOC_Os07g40770
OsAffx.16658.1.S1_at--526--9811Chr07:24427906..24427930 (25 bp)
TAACTCTGCGTTGAACCATGGGACA
LOC_Os07g40770
OsAffx.16658.1.S1_at--321--4331Chr07:24427891..24427915 (25 bp)
CCATGGGACAGTTTGCAGATCTTGC
LOC_Os07g40770
OsAffx.16658.1.S1_at--1158--1271Chr07:24427875..24427899 (25 bp)
AGATCTTGCTCCTGCGGGTTCTGCG
LOC_Os07g40770
OsAffx.16658.1.S1_at--893--4731Chr07:24427837..24427861 (25 bp)
GCTGTCTAACTGCTCTATCGAAGGA
LOC_Os07g40770
OsAffx.16658.1.S1_at--180--5711Chr07:24427814..24427838 (25 bp)
GACTAGTTGATGTTAGATCTTCCAA
LOC_Os07g40770
OsAffx.16658.1.S1_at--293--1691Chr07:24427784..24427808 (25 bp)
AGCCACAGAACCAAGCTCTACTAGA
LOC_Os07g40770
Target Sequence 
GGATGCAGAAGATCTCACCCAAGAAATGGCTGAACTAAGGTACCAAATAACTGGCATGCTTGAGGAAGAATACAAGCGTC
GGTCTTGCATTGAGCAGGCAGCTATCCAACAAATCCAGGAACTAGAGGCTCAGGTTTCCAAAGAGCAGAGAAAATTGAGT
GGAGCCCTGAGGAAACTGCAGGAATCACATGAACTAGCTCAGAAGCAATCTATGGAGATAAAGAAATTGAAGGATTCTTT
AGGGAGGTTTAACTCTGCGTTGAACCATGGGACAGTTTGCAGATCTTGCTCCTGCGGGTTCTGCGCAATGTTGTTAGAGC
TGTCTAACTGCTCTATCGAAGGACTAGTTGATGTTAGATCTTCCAATGAGAAGCCACAGAACCAAGCTCTACTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis