Browse Element(s) Details


OsAffx.16659.1.S1_at

Description tigr:9635.m04076
TID=OsAffx.16659.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4078011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40730Os.50618.1.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.3.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_x_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40740Os.53364.1.S1_at11/117+24415688..24417746Heparanase-like protein 1 precursor, putative, expressed
LOC_Os07g40750Os.53545.1.S1_at11/117+24418192..24420620pentatricopeptide, putative, expressed
LOC_Os07g40760OsAffx.32289.1.S1_at1/117+24421050..24426782transposon protein, putative, Mutator sub-class
LOC_Os07g40770OsAffx.16658.1.S1_at11/117+24427608..24431841expressed protein
LOC_Os07g40770Os.46451.1.S1_at1/117+24427608..24431841expressed protein
LOC_Os07g40780OsAffx.16659.1.S1_at11/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40780OsAffx.27050.1.S1_x_at1/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40790Os.54224.1.S1_x_at11/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.54224.1.S1_at10/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.47385.1.S1_at4/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40800Os.48371.1.S1_at9/117+24449939..24453879expressed protein
LOC_Os07g40800Os.57429.1.S1_s_at1/117+24449939..24453879expressed protein
LOC_Os07g40810OsAffx.16660.1.S1_at11/117+24454435..24458215NB-ARC domain containing protein
LOC_Os07g40820OsAffx.16653.3.A1_at11/117+24459197..24460741pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16659.1.S1_at--745--4851Chr07:24437878..24437902 (25 bp)
GCTACGGCTACAACTCCGACGAGGA
LOC_Os07g40780
OsAffx.16659.1.S1_at--365--5411Chr07:24437945..24437969 (25 bp)
GAAGCGAAGGGCTAGCTACCACTCT
LOC_Os07g40780
OsAffx.16659.1.S1_at--703--5311Chr07:24437950..24437974 (25 bp)
GAAGGGCTAGCTACCACTCTCCCAA
LOC_Os07g40780
OsAffx.16659.1.S1_at--760--2671Chr07:24438024..24438048 (25 bp)
AAGCGGACACGGTACGAGTGCCCGG
LOC_Os07g40780
OsAffx.16659.1.S1_at--121--5871Chr07:24438098..24438122 (25 bp)
GAGCCACAAGCGGATCAACACTAGC
LOC_Os07g40780
OsAffx.16659.1.S1_at--142--2691Chr07:24438105..24438129 (25 bp)
AAGCGGATCAACACTAGCTGCAGCG
LOC_Os07g40780
OsAffx.16659.1.S1_at--1154--5891Chr07:24438182..24438206 (25 bp)
GAGCTCGGAGACGTACGCCTCGCTG
LOC_Os07g40780
OsAffx.16659.1.S1_at--1088--8051Chr07:24438188..24438212 (25 bp)
GGAGACGTACGCCTCGCTGAGCACC
LOC_Os07g40780
OsAffx.16659.1.S1_at--757--11Chr07:24438252..24438276 (25 bp)
ATTGGCGACCGCAAGGCCAACAACA
LOC_Os07g40780
OsAffx.16659.1.S1_at--1150--2931Chr07:24438264..24438288 (25 bp)
AAGGCCAACAACAAGTCGTCAGCGG
LOC_Os07g40780
OsAffx.16659.1.S1_at--2--2471Chr07:24438270..24438294 (25 bp)
AACAACAAGTCGTCAGCGGAGGAGG
LOC_Os07g40780
Target Sequence 
GCTACGGCTACAACTCCGACGAGGATTCAGCTCTGCTCCAGTACGGCGGCGACGTCGCGAAGAGCAGGAAGCGAAGGGCT
AGCTACCACTCTCCCAATTCCATCTCCTCGAAGAAGAAGCAGCAGCCGCGCGCGGCGGCGCCGGCGAAGCGGACACGGTA
CGAGTGCCCGGGGTGCGGCAAGGTGTTCGCCTCCTACCAGGCGCTTGGCGGCCACCGCGCGAGCCACAAGCGGATCAACA
CTAGCTGCAGCGCCCCCAAGGTCTCCCCCGCCACCGCCGCGGCGGCGGCGCCCGCGCCGGAGCCGAGCTCGGAGACGTAC
GCCTCGCTGAGCACCCTCTCCCCCTCGGCGTCGCCGGGCTCGGCGGCCGCCGGCATTGGCGACCGCAAGGCCAACAACAA
GTCGTCAGCGGAGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis