Browse Element(s) Details


Os.46451.1.S1_at

Description gb:AK062938.1
DB_XREF= gi:32972956
TID=Os.46451.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NBS-LRR type resistance protein (OSJNBa0011L09.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-B05, full insert sequence.
FL= gb:AK100807.1 gb:AK062938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2548711/11Leucine Rich Repeat family protein, expressed
LOC_Os07g407701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25430NANA10+12819452..12822562serine-threonine protein phosphatase, putative, expressed
LOC_Os10g25450OsAffx.18396.1.S1_at11/1110+12828966..12832148Subtilisin N-terminal Region family protein, expressed
LOC_Os10g25465NANA10+12833523..12834090NA
LOC_Os10g25487Os.46451.1.S2_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.46451.3.S1_x_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.46451.2.S1_x_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.46451.1.S1_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.46451.3.S1_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.45957.3.S1_x_at4/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.49445.1.S1_at2/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.45957.4.S1_x_at1/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25502OsAffx.21171.5.S1_x_at1/1110+12861331..12863178retrotransposon protein, putative, unclassified
LOC_Os10g25517OsAffx.21171.3.S1_x_at5/1110+12864973..12865386retrotransposon protein, putative, unclassified
LOC_Os10g25530NANA10+12868472..12875130retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46451.1.S1_at--657--4051Chr10:12839968..12839992 (25 bp)
CGATGCGCAACTCCGGCGAACTGAT
LOC_Os10g25487
Os.46451.1.S1_at--261--1671Chr10:12840029..12840053 (25 bp)
AGCCTCCATTCACCGTCGGTGTGGT
LOC_Os10g25487
Os.46451.1.S1_at--374--8631Chr10:12840050..12840074 (25 bp)
TGGTGGCTTGGCTTCGCTCGCATCA
LOC_Os10g25487
Os.46451.1.S1_at--695--4711Chr10:12840093..12840117 (25 bp)
GCTGGCGTCGCTCAGATTCGATCCA
LOC_Os10g25487
Os.46451.1.S1_at--138--3091Chr10:12840142..12840166 (25 bp)
AATCAATAGTCCTGTTCCATTTGTT
LOC_Os10g25487
Os.46451.1.S1_at--443--8792Chr10:12840154..12840178 (25 bp)
TGTTCCATTTGTTTTTTCGGTCTTG
LOC_Os10g25487
Os.46451.1.S1_at--554--2531Chr10:12840179..12840203 (25 bp)
AACTATTAGATTGTTCCTCTGATTC
LOC_Os10g25487
Os.46451.1.S1_at--9--6711Chr10:12840191..12840215 (25 bp)
GTTCCTCTGATTCTTGATGCTAGTA
LOC_Os10g25487
Os.46451.1.S1_at--182--1211Chr10:12840235..12840259 (25 bp)
AGTTTCAACTTAATGTGCACTGCAT
LOC_Os10g25487
Os.46451.1.S1_at--773--7332Chr10:12840249..12840273 (25 bp)
GTGCACTGCATATTTATGATGGATA
LOC_Os10g25487
Os.46451.1.S1_at--410--832Chr10:12840267..12840291 (25 bp)
ATGGATAATGCAATGTTCATGGCTT
LOC_Os10g25487
Target Sequence 
CGATGCGCAACTCCGGCGAACTGATCCTCCCGGGTTGCCCGCCCCCGATCCGCGTCTTCTCAGCCTCCATTCACCGTCGG
TGTGGTGGCTTGGCTTCGCTCGCATCACCTCACCTCGCCCTCGTCGCTGGCGTCGCTCAGATTCGATCCACCTTCTGATG
ATCCCCTTCCCCCAAATCAATAGTCCTGTTCCATTTGTTTTTTCGGTCTTGAACTATTAGATTGTTCCTCTGATTCTTGA
TGCTAGTATATTTATTTATAGCTGTATAGTTTCAACTTAATGTGCACTGCATATTTATGATGGATAATGCAATGTTCATG
GCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis