Browse Element(s) Details


Os.46451.3.S1_x_at

Description gb:NM_196317.1
DB_XREF= gi:37533993
TID=Os.46451.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46451 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative NBS-LRR type resistance protein (OSJNBa0011L09.18), mRNA.
PROD=putative NBS-LRR type resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2548711/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25430NANA10+12819452..12822562serine-threonine protein phosphatase, putative, expressed
LOC_Os10g25450OsAffx.18396.1.S1_at11/1110+12828966..12832148Subtilisin N-terminal Region family protein, expressed
LOC_Os10g25465NANA10+12833523..12834090NA
LOC_Os10g25487Os.46451.1.S2_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.46451.3.S1_x_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.46451.2.S1_x_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.46451.1.S1_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.46451.3.S1_at11/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.45957.3.S1_x_at4/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.49445.1.S1_at2/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25487Os.45957.4.S1_x_at1/1110+12839808..12852128Leucine Rich Repeat family protein, expressed
LOC_Os10g25502OsAffx.21171.5.S1_x_at1/1110+12861331..12863178retrotransposon protein, putative, unclassified
LOC_Os10g25517OsAffx.21171.3.S1_x_at5/1110+12864973..12865386retrotransposon protein, putative, unclassified
LOC_Os10g25530NANA10+12868472..12875130retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46451.3.S1_x_at--842--8891Chr10:12841823..12841847 (25 bp)
TGAGTGTCACTCAGGACTTCAATGA
LOC_Os10g25487
Os.46451.3.S1_x_at--932--691Chr10:12841844..12841868 (25 bp)
ATGAGGCTCATCTTCTCAAAACCGC
LOC_Os10g25487
Os.46451.3.S1_x_at--885--6451Chr10:12841888..12841912 (25 bp)
GATAAGCAACAAATCCCTGCCGTTG
LOC_Os10g25487
Os.46451.3.S1_x_at--745--2751Chr10:12841913..12841937 (25 bp)
AAGACATGGCCCTGCTTGAGGATGC
LOC_Os10g25487
Os.46451.3.S1_x_at--599--10711Chr10:12841928..12841952 (25 bp)
TTGAGGATGCCCTGGTGGAAGCCCT
LOC_Os10g25487
Os.46451.3.S1_x_at--729--7591Chr10:12842050..12842074 (25 bp)
GGGACTTGTGTCCTTGTAACCACAA
LOC_Os10g25487
Os.46451.3.S1_x_at--1111--2531Chr10:12842129..12842153 (25 bp)
AACTAAGACTCGATGATTCCTGGAC
LOC_Os10g25487
Os.46451.3.S1_x_at--115--2891Chr10:12842450..12842474 (25 bp)
AAGGTGGTTCCATGAGAACTTCTGA
LOC_Os10g25487
Os.46451.3.S1_x_at--131--5491Chr10:12842465..12842489 (25 bp)
GAACTTCTGAAAAATTCGTCCCAAT
LOC_Os10g25487
Os.46451.3.S1_x_at--809--7211Chr10:12842482..12842506 (25 bp)
GTCCCAATTTTTGTCTTCAACGCAC
LOC_Os10g25487
Os.46451.3.S1_x_at--16--5572Chr10:12842508..12842532 (25 bp)
GAAAGAATCGTGTAATCCATTTTTT
LOC_Os10g25487
Target Sequence 
TGAGTGTCACTCAGGACTTCAATGAGGCTCATCTTCTCAAAACCGCCATTGCCATGGCAAAGTCAGATAAGCAACAAATC
CCTGCCGTTGAAGACATGGCCCTGCTTGAGGATGCCCTGGTGGAAGCCCTGAGAGGTAAGATGCTGTTGCTGGTAATGGA
CGACATGTGGACTGAGAAGGCATGGGACAATGGGCTCAGAGTCCCAATCACCAAAGCCTGTGCTCCAGGGACTTGTGTCC
TTGTAACCACAAGAAATGAAGATGTTGCTAAAGTGATGAAAGCTGCTCACACGCACCAAGTCACCAAACTAAGACTCGAT
GATTCCTGGACATTGCTCCAGAAACAGATATTACCGGACATAGGTGGTAAAGGTGGTTCCATGAGAACTTCTGAAAAATT
CGTCCCAATTTTTGTCTTCAACGCACAGAAAGAATCGTGTAATCCATTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46451.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis