Browse Element(s) Details


OsAffx.16670.1.S1_at

Description tigr:9635.m04123
TID=OsAffx.16670.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4121011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41180Os.6262.1.S1_at10/117+24653212..24658153Nuclear transport factor 2 domain containing protein, expressed
LOC_Os07g41190Os.7119.1.S1_at11/117+24658444..24660898WD-repeat protein 50, putative, expressed
LOC_Os07g41200Os.27494.1.S1_at10/117+24662565..24667626expressed protein
LOC_Os07g41210OsAffx.16670.1.S1_at11/117+24680733..24681179hypothetical protein
LOC_Os07g41220OsAffx.28855.3.S1_x_at4/117+24684175..24686182hypothetical protein
LOC_Os07g41220OsAffx.26553.2.S1_at1/117+24684175..24686182hypothetical protein
LOC_Os07g41230Os.53244.1.A1_at11/117+24697800..24701979hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16670.1.S1_at--572--3991Chr07:24681098..24681122 (25 bp)
CCGCCGGGTTATACTCCAACTAGAG
LOC_Os07g41210
OsAffx.16670.1.S1_at--897--5351Chr07:24680985..24681009 (25 bp)
GAAGAGCATCGCTGCAGAGCTTGCA
LOC_Os07g41210
OsAffx.16670.1.S1_at--364--1371Chr07:24680970..24680994 (25 bp)
AGAGCTTGCATCTGGTGCCGAACTG
LOC_Os07g41210
OsAffx.16670.1.S1_at--410--491Chr07:24680961..24680985 (25 bp)
ATCTGGTGCCGAACTGGCTGTTGCC
LOC_Os07g41210
OsAffx.16670.1.S1_at--523--4111Chr07:24680952..24680976 (25 bp)
CGAACTGGCTGTTGCCTGGGCCGCC
LOC_Os07g41210
OsAffx.16670.1.S1_at--230--4532Chr08:10947196..10947223 (25 bp)
GCCGCCGGTTCAGTGCTTGCCGTTG
NONE
OsAffx.16670.1.S1_at--929--9091Chr07:24680883..24680907 (25 bp)
TGCTGTTGGCGGCTGCGTACAGAAG
LOC_Os07g41210
OsAffx.16670.1.S1_at--392--6171Chr07:24680821..24680845 (25 bp)
GAGGAGGGACCGACGCCGGCTGGCT
LOC_Os07g41210
OsAffx.16670.1.S1_at--168--4271Chr07:24680806..24680830 (25 bp)
CCGGCTGGCTCAGGGACTGCGATAT
LOC_Os07g41210
OsAffx.16670.1.S1_at--724--7631Chr07:24680794..24680818 (25 bp)
GGGACTGCGATATCGCCGCTGCTGA
LOC_Os07g41210
OsAffx.16670.1.S1_at--303--7952Chr08:10941855..10941877 (23 bp)
GGATCTTGGAGGAAACGGGCAAACA
NONE
Target Sequence 
CCGCCGGGTTATACTCCAACTAGAGTGGCTAGGGATCACGGCAAGAAGAAAAGGGGAACAACGGCAGGTGGAGGGACCGA
GCACCCACCCTCTAGGCCGGCGCCGGTGAGGGCGAAGAGCATCGCTGCAGAGCTTGCATCTGGTGCCGAACTGGCTGTTG
CCTGGGCCGCCGCCGGTTCAGTGCTTGCCGTTGGGGCCGAAGGTGGCGGCGGCGCTGCTGTTGGCGGCTGCGTACAGAAG
GGAGGGAATGGTGGAGGCGGGTACGGGAACGCCGGAAGAGGAGGGACCGACGCCGGCTGGCTCAGGGACTGCGATATCGC
CGCTGCTGACGCCGGATCTTGGAGGAAACGGGCAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis