Browse Element(s) Details


OsAffx.16679.1.S1_at

Description tigr:9635.m04188
TID=OsAffx.16679.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4183011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41770Os.31312.5.S1_x_at4/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41770Os.31312.2.S1_x_at3/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41780NANA7+25027215..25033370retrotransposon protein, putative, unclassified
LOC_Os07g41790Os.12302.1.S1_at11/117+25034930..25037385small nuclear ribonucleoprotein G, putative, expressed
LOC_Os07g41800Os.7961.1.S1_s_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.5260.1.S1_at11/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41800Os.7961.1.S1_at2/117+25037542..25042037Peroxisome assembly protein 10, putative, expressed
LOC_Os07g41810Os.7961.1.S1_s_at11/117+25043658..25046687expressed protein
LOC_Os07g41810Os.7961.1.S1_at4/117+25043658..25046687expressed protein
LOC_Os07g41810Os.11984.1.S1_at3/117+25043658..25046687expressed protein
LOC_Os07g41820Os.11984.1.S2_at11/117+25047421..25049880expressed protein
LOC_Os07g41820Os.11984.1.S1_at11/117+25047421..25049880expressed protein
LOC_Os07g41830OsAffx.16679.1.S1_at11/117+25050161..25052503expressed protein
LOC_Os07g41840OsAffx.28864.1.S1_at11/117+25059228..25059732hypothetical protein
LOC_Os07g41850OsAffx.5596.1.S1_at11/117+25061621..25062850C1-like domain containing protein, expressed
LOC_Os07g41860OsAffx.5597.1.S1_at11/117+25075422..25075979C1-like domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16679.1.S1_at--657--3311Chr07:25051038..25051062 (25 bp)
CACAGGTCGCAGACGCGGTCGTTGT
LOC_Os07g41830
OsAffx.16679.1.S1_at--15--8431Chr07:25050934..25050958 (25 bp)
GGCCTCGTGAATGTCGAAGTCGCAG
LOC_Os07g41830
OsAffx.16679.1.S1_at--836--2851Chr07:25050918..25050942 (25 bp)
AAGTCGCAGGCCTTGCACCGGAGCC
LOC_Os07g41830
OsAffx.16679.1.S1_at--139--8511Chr07:25050831..25050855 (25 bp)
TGGCACCTCACCAGGACGTGCTGCG
LOC_Os07g41830
OsAffx.16679.1.S1_at--305--5891Chr07:25050715..25050825 (25 bp)
GAGCAGTCTCCCACAAGGGAGGCCT
LOC_Os07g41830
OsAffx.16679.1.S1_at--916--7611Chr07:25050699..25050723 (25 bp)
GGGAGGCCTTAAGATGTGCAAGTAT
LOC_Os07g41830
OsAffx.16679.1.S1_at--396--5171Chr07:25050667..25050691 (25 bp)
GCAAGACTTGGTTAGCATGTGCATT
LOC_Os07g41830
OsAffx.16679.1.S1_at--660--4991Chr07:25050653..25050677 (25 bp)
GCATGTGCATTAGCTGGATATGGAT
LOC_Os07g41830
OsAffx.16679.1.S1_at--177--7951Chr07:25050632..25050656 (25 bp)
GGATATAAGTGCCAAACTATTGAGG
LOC_Os07g41830
OsAffx.16679.1.S1_at--739--6891Chr07:25050207..25050231 (25 bp)
GTATCTTAGGCAACCAAATCATCCC
LOC_Os07g41830
OsAffx.16679.1.S1_at--224--2271Chr07:25050192..25050216 (25 bp)
AAATCATCCCTTCCCTTTATGGAGA
LOC_Os07g41830
Target Sequence 
CACAGGTCGCAGACGCGGTCGTTGTCGGCGACGCGGCCGAGGGCGAGGCCGTGCCACGGGTGCGCGGCGAAGGAGGAGAT
CGCCGGCTGGAAGTAGTCGGCGCAGGCCTCGTGAATGTCGAAGTCGCAGGCCTTGCACCGGAGCCCGACGAGGCCGCGGA
AGCCGGCGGCGCAGAGGTCGCAGACATGGCCGGAGCTGCTGCTGTACTGGCACCTCACCAGGACGTGCTGCGGGTGGGAG
CAGTCTCCCACAAGGGAGGCCTTAAGATGTGCAAGTATAGATGCTGCAAGACTTGGTTAGCATGTGCATTAGCTGGATAT
GGATATAAGTGCCAAACTATTGAGGCAAGAAATGGTATAATATGGGTTTGGTTGTTGAGAAATTCAAATAATTGTATCTT
AGGCAACCAAATCATCCCTTCCCTTTATGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis