Browse Element(s) Details


OsAffx.16683.1.S1_at

Description tigr:9635.m04237
TID=OsAffx.16683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4231011/11Lung seven transmembrane receptor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42270NANA7+25293079..25293903hypothetical protein
LOC_Os07g42280Os.4972.1.S1_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280OsAffx.5607.1.S1_x_at11/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42280Os.36147.1.S1_at1/117+25296748..25304049von Willebrand factor type A domain containing protein, expressed
LOC_Os07g42290Os.54374.1.S1_at11/117+25307339..25309942expressed protein
LOC_Os07g42300Os.12835.2.S1_a_at9/117+25311858..25314982Elongation factor 1-beta, putative, expressed
LOC_Os07g42310OsAffx.16683.1.S1_at11/117+25318861..25321486Lung seven transmembrane receptor family protein, expressed
LOC_Os07g42330OsAffx.5608.1.S1_at11/117+25325306..25326152SPX domain containing protein, expressed
LOC_Os07g42340NANA7+25328412..25328666hypothetical protein
LOC_Os07g42354OsAffx.28872.1.S1_at10/117+25331784..25337035hypothetical protein
LOC_Os07g42354Os.51960.1.S1_at2/117+25331784..25337035hypothetical protein
LOC_Os07g42370Os.12710.1.S1_at11/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42370OsAffx.24973.1.S1_at1/117+25346313..25350115ZIM motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16683.1.S1_at--990--2191Chr07:25319990..25320014 (25 bp)
ACAACGTCGGCATCGTCAGTGACCA
LOC_Os07g42310
OsAffx.16683.1.S1_at--948--1911Chr07:25320064..25320088 (25 bp)
ACGGTGTTCATCTACTGGATCTTCA
LOC_Os07g42310
OsAffx.16683.1.S1_at--124--10531Chr07:25320085..25320109 (25 bp)
TTCACCTCGCTGTCAAGAACTATCA
LOC_Os07g42310
OsAffx.16683.1.S1_at--407--8151Chr07:25320254..25320278 (25 bp)
GGAAATTCGCGAATTCTCTCACCAT
LOC_Os07g42310
OsAffx.16683.1.S1_at--810--8711Chr07:25320290..25320314 (25 bp)
TGTCGCTCGGCTGGATCACATTTGA
LOC_Os07g42310
OsAffx.16683.1.S1_at--305--2771Chr07:25321048..25321072 (25 bp)
AAGACGACTGATGAGCACAACGAGC
LOC_Os07g42310
OsAffx.16683.1.S1_at--64--851Chr07:25321149..25321173 (25 bp)
ATGGACGCCCTCACAAAATTCAATG
LOC_Os07g42310
OsAffx.16683.1.S1_at--1162--111Chr07:25321166..25321293 (25 bp)
ATTCAATGAGGTTCGCCTACTCGAG
LOC_Os07g42310
OsAffx.16683.1.S1_at--227--3731Chr07:25321381..25321405 (25 bp)
CTACGTGGACAACTGGGCGTGCTAC
LOC_Os07g42310
OsAffx.16683.1.S1_at--946--951Chr07:25321413..25321437 (25 bp)
AGGACGCCAAGATCATACTGAGGAC
LOC_Os07g42310
OsAffx.16683.1.S1_at--1091--311Chr07:25321427..25321451 (25 bp)
ATACTGAGGACGGACTCTGGCGTGT
LOC_Os07g42310
Target Sequence 
ACAACGTCGGCATCGTCAGTGACCACTCGCCGGCGAGGAGGCTCTTCTTCATTCTCCCCGTCGCCGCCCTCAACACGGTG
TTCATCTACTGGATCTTCACCTCGCTGTCAAGAACTATCAGCAAGCTCAAGGCGAGGAGGATGACGGCGAAGCTTGAAAT
GTATCGGAAATTCGCGAATTCTCTCACCATCGCCGTGGCCCTGTCGCTCGGCTGGATCACATTTGAGGTCCATTTTAAGA
CGACTGATGAGCACAACGAGCGGTGGCGAGTGGCGTGGGTAATCCCCGCGGTGTGGGAGCTCATCTCCTTCTTCCTCCTC
TGCACCATCTGCATCCTATGGACGCCCTCACAAAATTCAATGAGGTTCGCCTACTCGAGGGAGGAGTGTGAGGATGACAC
GGAGCACAATGACGAGGACGATGACGTGGAGGACACGCGGCCGCTGATCAGGGCCGGGCCGCTGTCCTACGTGGACAACT
GGGCGTGCTACGTCACGCAGGACGCCAAGATCATACTGAGGACGGACTCTGGCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis