Browse Element(s) Details


OsAffx.16788.1.S1_at

Description tigr:9636.m00132
TID=OsAffx.16788.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g023209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02310NANA8+874322..876939hypothetical protein
LOC_Os08g02320OsAffx.16788.1.S1_at9/118+882466..883768hypothetical protein
LOC_Os08g02330Os.6253.1.S1_a_at11/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02330OsAffx.28987.1.S1_x_at9/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02330OsAffx.28987.1.S1_at8/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02340Os.12280.1.S1_x_at11/118+897776..89935060S acidic ribosomal protein P1, putative, expressed
LOC_Os08g02340Os.57447.1.S1_x_at6/118+897776..89935060S acidic ribosomal protein P1, putative, expressed
LOC_Os08g02350OsAffx.28988.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350Os.16539.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.21992.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.30172.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350Os.20190.1.S1_at1/118+900179..928280expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16788.1.S1_at--928--4971NONE
GCATCCGCACGGGTAGACGACTATT
NONE
OsAffx.16788.1.S1_at--454--551NONE
ATCCGCACGGGTAGACGACTATTGT
NONE
OsAffx.16788.1.S1_at--44--3351Chr08:883675..883696 (22 bp)
CACGGGTAGACGACTATTGTCGCTA
LOC_Os08g02320
OsAffx.16788.1.S1_at--775--1391Chr08:883679..883703 (25 bp)
AGACGACTATTGTCGCTAGCTGCAG
LOC_Os08g02320
OsAffx.16788.1.S1_at--863--5691Chr08:883683..883707 (25 bp)
GACTATTGTCGCTAGCTGCAGTGCT
LOC_Os08g02320
OsAffx.16788.1.S1_at--1121--31Chr08:883687..883711 (25 bp)
ATTGTCGCTAGCTGCAGTGCTGGCA
LOC_Os08g02320
OsAffx.16788.1.S1_at--853--8691Chr08:883689..883713 (25 bp)
TGTCGCTAGCTGCAGTGCTGGCAAC
LOC_Os08g02320
OsAffx.16788.1.S1_at--727--4851Chr08:883693..883717 (25 bp)
GCTAGCTGCAGTGCTGGCAACTGAT
LOC_Os08g02320
OsAffx.16788.1.S1_at--230--1611Chr08:883696..883720 (25 bp)
AGCTGCAGTGCTGGCAACTGATCCT
LOC_Os08g02320
OsAffx.16788.1.S1_at--43--2571Chr08:883711..883735 (25 bp)
AACTGATCCTGCTGCTTATGTTGCT
LOC_Os08g02320
OsAffx.16788.1.S1_at--483--1971Chr08:883712..883736 (25 bp)
ACTGATCCTGCTGCTTATGTTGCTG
LOC_Os08g02320
Target Sequence 
GCATCCGCACGGGTAGACGACTATTGTCGCTAGCTGCAGTGCTGGCAACTGATCCTGCTGCTTATGTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis