Browse Element(s) Details


OsAffx.16835.1.S1_at

Description tigr:9636.m00439
TID=OsAffx.16835.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0511011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05090OsAffx.5711.1.S1_x_at11/118+2617172..2617546hypothetical protein
LOC_Os08g05100OsAffx.5712.1.S1_at11/118+2631866..2632143hypothetical protein
LOC_Os08g05110OsAffx.16835.1.S1_at11/118+2633007..2633817expressed protein
LOC_Os08g05120NANA8+2640321..2646419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05130NANA8+2646736..2649679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05140OsAffx.5713.1.S1_at11/118+2652090..2653373hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16835.1.S1_at--516--2271Chr08:2633507..2633531 (25 bp)
AAATCCACGAGCTCTCGGGACGGCA
LOC_Os08g05110
OsAffx.16835.1.S1_at--1006--1351Chr08:2633541..2633565 (25 bp)
AGAGACCACGATAGCGGAGCTCGCA
LOC_Os08g05110
OsAffx.16835.1.S1_at--429--3551Chr08:2633597..2633621 (25 bp)
CATCTGGCGATGCTCGGCAACTCTT
LOC_Os08g05110
OsAffx.16835.1.S1_at--621--8231Chr08:2633612..2633636 (25 bp)
GGCAACTCTTCTCCAATGGCAAATA
LOC_Os08g05110
OsAffx.16835.1.S1_at--596--9911Chr08:2633635..2633659 (25 bp)
TACGATGATGGCAACAGCATTCATG
LOC_Os08g05110
OsAffx.16835.1.S1_at--313--4951Chr08:2633651..2633675 (25 bp)
GCATTCATGGGCTGATCCGCGAAGG
LOC_Os08g05110
OsAffx.16835.1.S1_at--647--6371Chr08:2633664..2633688 (25 bp)
GATCCGCGAAGGTGGTATCCCTTTC
LOC_Os08g05110
OsAffx.16835.1.S1_at--1124--5871Chr08:2633692..2633716 (25 bp)
GAGCGCGATGGATCCACGACGACAG
LOC_Os08g05110
OsAffx.16835.1.S1_at--367--6251Chr08:2633698..2633722 (25 bp)
GATGGATCCACGACGACAGAGGCAG
LOC_Os08g05110
OsAffx.16835.1.S1_at--1154--2131Chr08:2633713..2633737 (25 bp)
ACAGAGGCAGCGTCTAGCACACGGA
LOC_Os08g05110
OsAffx.16835.1.S1_at--849--10011Chr08:2633727..2633751 (25 bp)
TAGCACACGGATCAGCGACGCGGCA
LOC_Os08g05110
Target Sequence 
AAATCCACGAGCTCTCGGGACGGCAGGAGGAGACAGAGACCACGATAGCGGAGCTCGCAGGAGGAGCAAGCGCGTCCCTT
CCCCCATGGGCATCTGGCGATGCTCGGCAACTCTTCTCCAATGGCAAATACGATGATGGCAACAGCATTCATGGGCTGAT
CCGCGAAGGTGGTATCCCTTTCCCCGAGCGCGATGGATCCACGACGACAGAGGCAGCGTCTAGCACACGGATCAGCGACG
CGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis