Browse Element(s) Details


OsAffx.5713.1.S1_at

Description tigr:9636.m00442
TID=OsAffx.5713.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0514011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05100OsAffx.5712.1.S1_at11/118+2631866..2632143hypothetical protein
LOC_Os08g05110OsAffx.16835.1.S1_at11/118+2633007..2633817expressed protein
LOC_Os08g05120NANA8+2640321..2646419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05130NANA8+2646736..2649679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05140OsAffx.5713.1.S1_at11/118+2652090..2653373hypothetical protein
LOC_Os08g05150NANA8+2660094..2664335retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5713.1.S1_at--2--1051Chr08:2652475..2652499 (25 bp)
AGGTGCCAGCCGTATTGCCGCGGTA
LOC_Os08g05140
OsAffx.5713.1.S1_at--604--5391Chr08:2652585..2652609 (25 bp)
GAAGCAGCCAAATCTAACATGTGTT
LOC_Os08g05140
OsAffx.5713.1.S1_at--1086--2791Chr08:2652629..2652653 (25 bp)
AAGATGTGATGTGCAGTGTCCCATA
LOC_Os08g05140
OsAffx.5713.1.S1_at--129--3671Chr08:2652668..2652692 (25 bp)
CTTACAGGATACAGCTCGTCATCGT
LOC_Os08g05140
OsAffx.5713.1.S1_at--175--4031Chr08:2652684..2652708 (25 bp)
CGTCATCGTCGTCATTTGTCGTGCT
LOC_Os08g05140
OsAffx.5713.1.S1_at--694--7311Chr08:2652704..2652728 (25 bp)
GTGCTCCGCATCTTCTTTAGTTCTT
LOC_Os08g05140
OsAffx.5713.1.S1_at--481--5071Chr08:2652778..2652802 (25 bp)
GCACGGTAATAATGGATCCCTCTCT
LOC_Os08g05140
OsAffx.5713.1.S1_at--150--10071Chr08:2652802..2652907 (25 bp)
TAGTCTACGGGCGTGTGTTCACATG
LOC_Os08g05140
OsAffx.5713.1.S1_at--1--5671Chr08:2652908..2652932 (25 bp)
GACATGTGACAGTGTCCTCGAAGAA
LOC_Os08g05140
OsAffx.5713.1.S1_at--267--7631Chr08:2652937..2652961 (25 bp)
GGGACATGCCGCCAGAGCAGTTCAT
LOC_Os08g05140
OsAffx.5713.1.S1_at--111--4992Chr08:2652968..2652992 (25 bp)
GCATGCATCGATGCGGTTGGCGCAC
LOC_Os08g05140
Target Sequence 
AGGTGCCAGCCGTATTGCCGCGGTACCGCCTCGCCGTGGCGTCCTCGAAGAACACGGCGAGGATGGCGTCGAACATCGAG
CGCCGCATCGGCTTGTCCCCCGAATGGGCAGAAGCAGCCAAATCTAACATGTGTTATGAAAAATCCACACGAACAAGATG
TGATGTGCAGTGTCCCATAAAAAGCAAATACTGCTTACAGGATACAGCTCGTCATCGTCGTCATTTGTCGTGCTCCGCAT
CTTCTTTAGTTCTTCTTCCTCCTCAACGGCAGCATCTCAGTCGCCCACGGCGTCTCGGTGACCGCACGGTAATAATGGAT
CCCTCTCTAGTCTACGGGCGTGTGTTCACATGGACATGTGACAGTGTCCTCGAAGAACACTGGGACATGCCGCCAGAGCA
GTTCATGAAGACGCATGCATCGATGCGGTTGGCGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis