Browse Element(s) Details


OsAffx.5712.1.S1_at

Description tigr:9636.m00438
TID=OsAffx.5712.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0510011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05090OsAffx.5711.1.S1_x_at11/118+2617172..2617546hypothetical protein
LOC_Os08g05100OsAffx.5712.1.S1_at11/118+2631866..2632143hypothetical protein
LOC_Os08g05110OsAffx.16835.1.S1_at11/118+2633007..2633817expressed protein
LOC_Os08g05120NANA8+2640321..2646419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05130NANA8+2646736..2649679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05140OsAffx.5713.1.S1_at11/118+2652090..2653373hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5712.1.S1_at--66--6211Chr08:2632052..2632076 (25 bp)
GAGGCAGTGCAAGGATAGCTGACAT
LOC_Os08g05100
OsAffx.5712.1.S1_at--97--7231Chr08:2631990..2632014 (25 bp)
GTCGCAGACTCGCAGCTTGGTGACC
LOC_Os08g05100
OsAffx.5712.1.S1_at--1122--5031Chr08:2631987..2632011 (25 bp)
GCAGACTCGCAGCTTGGTGACCTTG
LOC_Os08g05100
OsAffx.5712.1.S1_at--871--1391Chr08:2631985..2632009 (25 bp)
AGACTCGCAGCTTGGTGACCTTGCA
LOC_Os08g05100
OsAffx.5712.1.S1_at--459--1991Chr08:2631983..2632007 (25 bp)
ACTCGCAGCTTGGTGACCTTGCAGA
LOC_Os08g05100
OsAffx.5712.1.S1_at--321--9351Chr08:2631981..2632005 (25 bp)
TCGCAGCTTGGTGACCTTGCAGAGG
LOC_Os08g05100
OsAffx.5712.1.S1_at--963--4931Chr08:2631981..2632000 (20 bp)
GCTTGGTGACCTTGCAGAGGGATGT
LOC_Os08g05100
OsAffx.5712.1.S1_at--1099--471Chr08:2631923..2631947 (25 bp)
ATGTGGGAGGATCATTTTGCAAAAG
LOC_Os08g05100
OsAffx.5712.1.S1_at--651--7651Chr08:2631919..2631943 (25 bp)
GGGAGGATCATTTTGCAAAAGAATC
LOC_Os08g05100
OsAffx.5712.1.S1_at--186--3071Chr08:2631898..2631922 (25 bp)
AATCTCTTGAAGGACTTCGAAGTGA
LOC_Os08g05100
OsAffx.5712.1.S1_at--787--9511Chr08:2631896..2631920 (25 bp)
TCTCTTGAAGGACTTCGAAGTGATT
LOC_Os08g05100
Target Sequence 
GAGGCAGTGCAAGGATAGCTGACATGGGGGAGGCAACGGCACGTGCGAGGAGGAGAGGAGGGGTCGCAGACTCGCAGCTT
GGTGACCTTGCAGAGGGATGTGGGAGGATCATTTTGCAAAAGAATCTCTTGAAGGACTTCGAAGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis