Browse Element(s) Details


OsAffx.16839.1.S1_s_at

Description tigr:9636.m00482
TID=OsAffx.16839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sm protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g055309/11small nuclear ribonucleoprotein E, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05520Os.49830.1.S1_at11/118+2942209..2945028Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g05530Os.25436.1.S1_at11/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05530OsAffx.16839.1.S1_s_at9/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05540OsAffx.5717.1.S1_at11/118+2962018..2962695expressed protein
LOC_Os08g05550Os.36897.1.A1_at11/118+2962962..2965420hypothetical protein
LOC_Os08g05560Os.53532.1.S1_at11/118+2966257..2970070Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g05570Os.10774.1.S1_at10/118+2971047..2975917Monodehydroascorbate reductase, chloroplast precursor, putative, expressed
LOC_Os08g05580OsAffx.16840.1.S1_at11/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05580OsAffx.17990.1.S1_at1/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05590OsAffx.29048.1.S1_at11/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_at2/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_x_at1/118+2981082..2984672aquaporin NIP5.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16839.1.S1_s_at--434--6411Chr08:2959372..2959396 (25 bp)
GATCTCCGGATTGAGGGCCGGATCA
LOC_Os08g05530
OsAffx.16839.1.S1_s_at--39--8431NONE
GGCCGGATCATTGGCTTTGATGAGT
NONE
OsAffx.16839.1.S1_s_at--666--7951NONE
GGATCATTGGCTTTGATGAGTACAT
NONE
OsAffx.16839.1.S1_s_at--111--6311Chr08:2960877..2960901 (25 bp)
GATGAGTACATGAATTTGGTCCTTG
LOC_Os08g05530
OsAffx.16839.1.S1_s_at--283--8891Chr08:2960879..2960903 (25 bp)
TGAGTACATGAATTTGGTCCTTGAT
LOC_Os08g05530
OsAffx.16839.1.S1_s_at--978--591Chr08:2960905..2960929 (25 bp)
ATGCTGAGGAAATCAACGTTAAGAA
LOC_Os08g05530
OsAffx.16839.1.S1_s_at--295--9671Chr08:2960917..2960941 (25 bp)
TCAACGTTAAGAAGGATACTAGGAA
LOC_Os08g05530
OsAffx.16839.1.S1_s_at--966--2751Chr08:2960928..2960951 (24 bp)
AAGGATACTAGGAAATCATTGGGTA
LOC_Os08g05530
OsAffx.16839.1.S1_s_at--7--8151Chr08:2960938..2961050 (25 bp)
GGAAATCATTGGGTAGGATACTATT
LOC_Os08g05530
OsAffx.16839.1.S1_s_at--759--7851Chr08:2961037..2961061 (25 bp)
GGTAGGATACTATTGAAAGGCGATA
LOC_Os08g05530
OsAffx.16839.1.S1_s_at--791--5571Chr08:2961051..2961075 (25 bp)
GAAAGGCGATAACATAACTCTGATG
LOC_Os08g05530
Target Sequence 
GATCTCCGGATTGAGGGCCGGATCATTGGCTTTGATGAGTACATGAATTTGGTCCTTGATGATGCTGAGGAAATCAACGT
TAAGAAGGATACTAGGAAATCATTGGGTAGGATACTATTGAAAGGCGATAACATAACTCTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16839.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis