Browse Element(s) Details


OsAffx.16870.1.S1_x_at

Description tigr:9636.m00655
TID=OsAffx.16870.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY077671 At1g22370T16E15_3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0720011/11Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g072701/11Cytokinin-O-glucosyltransferase 2, putative
LOC_Os12g391101/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07130NANA8+3985008..3991163transposon protein, putative, unclassified
LOC_Os08g07140NANA8+3991805..3995041transposon protein, putative, unclassified
LOC_Os08g07150OsAffx.29073.1.S1_x_at11/118+3997993..3998311hypothetical protein
LOC_Os08g07160OsAffx.16869.1.S1_at11/118+3999072..3999344hypothetical protein
LOC_Os08g07170NANA8+4005027..4006931Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07180NANA8+4007771..4008304Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07189NANA8+4009918..4010018NA
LOC_Os08g07200OsAffx.16870.1.S1_x_at11/118+4011576..4013735Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07200OsAffx.16870.1.S1_at11/118+4011576..4013735Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07200Os.29966.1.S1_x_at1/118+4011576..4013735Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07200Os.29966.1.S1_at1/118+4011576..4013735Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07210OsAffx.5733.1.S1_at11/118+4014636..4015495hypothetical protein
LOC_Os08g07220NANA8+4017330..4022355retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g07230NANA8+4023033..4025974retrotransposon protein, putative, unclassified
LOC_Os08g07240OsAffx.29075.1.S1_at11/118+4030933..4032737hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0008270molecular_functionzinc ion binding
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16870.1.S1_x_at--617--1312Chr12:24028366..24028385 (20 bp)
AGATGGGCGCCGTCGTGTACGTCAA
LOC_Os12g39110
OsAffx.16870.1.S1_x_at--905--2511Chr08:4013178..4013202 (25 bp)
AACTTCGGCAGCCTCACCGTGCTGA
LOC_Os08g07200
OsAffx.16870.1.S1_x_at--964--8931Chr08:4013200..4013224 (25 bp)
TGACGCCGCAGCAGCTCGCCGAGTT
LOC_Os08g07200
OsAffx.16870.1.S1_x_at--67--4551Chr08:4013251..4013275 (25 bp)
GCCCATTCCTGTGGGTCATCAGGGA
LOC_Os08g07200
OsAffx.16870.1.S1_x_at--1087--7811Chr08:4013264..4013288 (25 bp)
GGTCATCAGGGAGAACCTCGTCGTC
LOC_Os08g07200
OsAffx.16870.1.S1_x_at--164--9132Chr08:4013475..4013499 (25 bp)
TGCTGGCCGGTGTTCGCCGACCAGT
LOC_Os08g07200
OsAffx.16870.1.S1_x_at--547--4511Chr08:4013490..4013514 (25 bp)
GCCGACCAGTACACCAACTGCAAGT
LOC_Os08g07200
OsAffx.16870.1.S1_x_at--395--1711Chr08:4013502..4013526 (25 bp)
ACCAACTGCAAGTACGCCTGCGAGG
LOC_Os08g07200
OsAffx.16870.1.S1_x_at--147--4371Chr08:4013582..4013606 (25 bp)
CCACGTCGAGCTGGCGATGGAGTCG
LOC_Os08g07200
OsAffx.16870.1.S1_x_at--502--4671Chr08:4013668..4013692 (25 bp)
GCGGGTCGTCGTACGAGAACCTGCA
LOC_Os08g07200
OsAffx.16870.1.S1_x_at--450--6991Chr08:4013678..4013702 (25 bp)
GTACGAGAACCTGCAGAGCATGGTG
LOC_Os08g07200
Target Sequence 
AGATGGGCGCCGTCGTGTACGTCAACTTCGGCAGCCTCACCGTGCTGACGCCGCAGCAGCTCGCCGAGTTCGCGTGGGGC
CTCGCCGCGACGGGCCGCCCATTCCTGTGGGTCATCAGGGAGAACCTCGTCGTCCCCGGCGACGGCGGCGGCGACGCGCT
GCTGCCGACGGGGTTCGCGGCGGCGACGGAGGGGCGGCGGTGCGTGGCGACGTGGTGCCCGCAGGATCGCGTGCTGCGCC
ACCGCGCCGTGGGGTGCTTCGTGACGCACAGCGGGTGGAACTCGACGTGCGAGGGCGTCGCCGCCGGCGTGCCGATGGTG
TGCTGGCCGGTGTTCGCCGACCAGTACACCAACTGCAAGTACGCCTGCGAGGCGTGGGGCGTCGGCGTGCGGCTCGACGC
CGAGGTGAGGCGGGAGCAGGTCGCCGGCCACGTCGAGCTGGCGATGGAGTCGGAGGAGATGCGGCGCGCCGCGGCGAGGT
GGAAGGCCCAGGCGGAGGCGGCGGCGCGCCGCGGCGGGTCGTCGTACGAGAACCTGCAGAGCATGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16870.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis