Browse Element(s) Details


OsAffx.16902.1.S1_at

Description tigr:9636.m00838
TID=OsAffx.16902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT002250 At4g27030F10M23_370
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0885011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08830Os.9520.1.S1_at10/118+5112410..5121779expressed protein
LOC_Os08g08840Os.4078.1.S1_at10/118+5133330..5137307Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os08g08850OsAffx.16902.1.S1_at11/118+5139288..5140218expressed protein
LOC_Os08g08860Os.14866.1.S1_at11/118+5140640..5143972CRS2-associated factor 2, putative, expressed
LOC_Os08g08870OsAffx.19542.3.S1_x_at2/118+5146553..5150459retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g08880OsAffx.16903.1.S1_at11/118+5160866..5163221hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16902.1.S1_at--986--1911Chr08:5139609..5139633 (25 bp)
ACGGGCGTCTACCACTGGCTCGTCG
LOC_Os08g08850
OsAffx.16902.1.S1_at--737--1711Chr08:5139619..5139643 (25 bp)
ACCACTGGCTCGTCGACAACTACGG
LOC_Os08g08850
OsAffx.16902.1.S1_at--573--391Chr08:5139714..5139738 (25 bp)
ATCACGCGGCGGGAGCCGTGCAACA
LOC_Os08g08850
OsAffx.16902.1.S1_at--239--8371Chr08:5139721..5139745 (25 bp)
GGCGGGAGCCGTGCAACAACCTGCA
LOC_Os08g08850
OsAffx.16902.1.S1_at--208--4671Chr08:5139853..5139877 (25 bp)
GCGTGGTGCTGAGCCAGCAGTTCCA
LOC_Os08g08850
OsAffx.16902.1.S1_at--641--8911Chr08:5139862..5139886 (25 bp)
TGAGCCAGCAGTTCCACGCGTGGGC
LOC_Os08g08850
OsAffx.16902.1.S1_at--378--1231Chr08:5139871..5139895 (25 bp)
AGTTCCACGCGTGGGCGCACGGCAA
LOC_Os08g08850
OsAffx.16902.1.S1_at--686--1852Chr08:5139988..5140012 (25 bp)
ACGACAACAACTACTGCATCGTCAG
LOC_Os08g08850
OsAffx.16902.1.S1_at--933--4971Chr08:5140003..5140027 (25 bp)
GCATCGTCAGCGGAATGTGGAACGC
LOC_Os08g08850
OsAffx.16902.1.S1_at--900--9391Chr08:5140006..5140030 (25 bp)
TCGTCAGCGGAATGTGGAACGCGAC
LOC_Os08g08850
OsAffx.16902.1.S1_at--435--4091Chr08:5140027..5140051 (25 bp)
CGACGCTGGACAGGCACCGCGTGTT
LOC_Os08g08850
Target Sequence 
ACGGGCGTCTACCACTGGCTCGTCGACAACTACGGCGACGCCGACACCCCGGTGCTCGGCCCCCAGATCGCCGCGTTCCA
GGGCCACCACCGCCACCCCTCCACCATCACGCGGCGGGAGCCGTGCAACAACCTGCACGCCCTGGCGCGCGCCGTCGCGC
TCGCCCTCCCGCCCGCCGGCGCCGCCCTCGCCGCCGCGGGCGCGCCCGCGTCCGCGCACGCCTTCGCCGCCGTGTTCGCG
GCGTGCGTGGTGCTGAGCCAGCAGTTCCACGCGTGGGCGCACGGCAACCCGCGACGGCTGCCCCCCGGCGTCGGGGCGAT
GCAGCGCGCCGGCGTGCTCGTGTCGCGCGCCCAGCACGGCGCGCACCACCGCGCGCCGTACGACAACAACTACTGCATCG
TCAGCGGAATGTGGAACGCGACGCTGGACAGGCACCGCGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis