Browse Element(s) Details


OsAffx.16903.1.S1_at

Description tigr:9636.m00841
TID=OsAffx.16903.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0888011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08840Os.4078.1.S1_at10/118+5133330..5137307Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative, expressed
LOC_Os08g08850OsAffx.16902.1.S1_at11/118+5139288..5140218expressed protein
LOC_Os08g08860Os.14866.1.S1_at11/118+5140640..5143972CRS2-associated factor 2, putative, expressed
LOC_Os08g08870OsAffx.19542.3.S1_x_at2/118+5146553..5150459retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g08880OsAffx.16903.1.S1_at11/118+5160866..5163221hypothetical protein
LOC_Os08g08890OsAffx.16904.1.S1_at10/118+5165347..5167682hypothetical protein
LOC_Os08g08900OsAffx.16905.1.S1_at6/118+5171144..5171931hypothetical protein
LOC_Os08g08910OsAffx.29110.1.S1_at8/118+5173503..5175177hypothetical protein
LOC_Os08g08920NANA8+5180531..5181354Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os08g08930OsAffx.16906.1.S1_at11/118+5187545..5187961hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16903.1.S1_at--74--6731Chr08:5160896..5160920 (25 bp)
GTTCTAGCATTAGCGGCACCTGTAA
LOC_Os08g08880
OsAffx.16903.1.S1_at--396--8731Chr08:5160916..5160940 (25 bp)
TGTAACTAAATTCAAGCCTCCCCAA
LOC_Os08g08880
OsAffx.16903.1.S1_at--519--1551Chr08:5160958..5160982 (25 bp)
AGCTTCTTCATCCAATCATGCCAAA
LOC_Os08g08880
OsAffx.16903.1.S1_at--714--2871Chr08:5160988..5161012 (25 bp)
AAGGGCATCGACTGATGGACCTTCA
LOC_Os08g08880
OsAffx.16903.1.S1_at--105--8531Chr08:5161003..5161234 (25 bp)
TGGACCTTCAGGTATCATCAAGCTG
LOC_Os08g08880
OsAffx.16903.1.S1_at--181--5391Chr08:5161280..5161417 (25 bp)
GAAGCAACTGACTTTGTGCACCAAA
LOC_Os08g08880
OsAffx.16903.1.S1_at--1053--7671Chr08:5161744..5161768 (25 bp)
GGGTTAAATCAACAGCAGCCTGCTT
LOC_Os08g08880
OsAffx.16903.1.S1_at--481--10091Chr08:5161772..5161796 (25 bp)
TAGGCCTTGCACATGGTGGACCACA
LOC_Os08g08880
OsAffx.16903.1.S1_at--417--7851Chr08:5162054..5162078 (25 bp)
GGTATCACCATGCTGCAGGAATCAA
LOC_Os08g08880
OsAffx.16903.1.S1_at--169--8931Chr08:5162446..5162470 (25 bp)
TGACCTAGGCCTTGCAGATGTACCA
LOC_Os08g08880
OsAffx.16903.1.S1_at--485--7791Chr08:5163147..5163171 (25 bp)
GGTCCAGCTGATCCTAATGAAGATG
LOC_Os08g08880
Target Sequence 
GTTCTAGCATTAGCGGCACCTGTAACTAAATTCAAGCCTCCCCAAACGAGAAAAAGGAATAAAGCTTCTTCATCCAATCA
TGCCAAATCAAAAAGGGCATCGACTGATGGACCTTCAGGTATCATCAAGCTGAAGGAATCAACAACATTTGCTCATGGCA
AAGACCAAATTATGGAGGAAGCAACTGACTTTGTGCACCAAATTGGCACTGTGAACAACATACAACAAAACCAGGAGGAG
CCAGCAGGGTTAAATCAACAGCAGCCTGCTTACCTAGGCCTTGCACATGGTGGACCACAAATTCCACTGGAAGCAGCAGG
TATCACCATGCTGCAGGAATCAACCACTGCAAATGGCATAGCTCAAATTATGGAGGAAGAAACTGACACTGATGACAACG
TACAACAAAACAAGGAGGAGCCAGCAGGGTTAAATCAGCAGCAGCCTGACCTAGGCCTTGCAGATGTACCACAAATTCCA
GAGGAAGCAGCTCCAGGTCCAGCTGATCCTAATGAAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis