Browse Element(s) Details


OsAffx.16937.1.S1_at

Description tigr:9635.m03255
TID=OsAffx.16937.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g330809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33020NANA7+19725612..19726449hypothetical protein
LOC_Os07g33030OsAffx.28726.1.S1_at8/117+19730151..19730834hypothetical protein
LOC_Os07g33040OsAffx.28726.3.S1_at11/117+19734760..19735260hypothetical protein
LOC_Os07g33050OsAffx.28725.1.S1_at11/117+19738699..19741162expressed protein
LOC_Os07g33060OsAffx.16536.1.S1_at11/117+19742359..19744536hypothetical protein
LOC_Os07g33070OsAffx.28726.4.S1_x_at2/117+19746295..19746753hypothetical protein
LOC_Os07g33080OsAffx.16937.1.S1_at9/117+19749503..19751997hypothetical protein
LOC_Os07g33090OsAffx.28726.4.S1_x_at11/117+19756747..19757229hypothetical protein
LOC_Os07g33100OsAffx.5509.1.S1_at10/117+19760726..19766881Uncharacterized ACR, COG1590 family protein, expressed
LOC_Os07g33110Os.2690.1.S1_a_at11/117+19767311..19772751Calcium-dependent protein kinase, isoform 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16937.1.S1_at--306--9891Chr07:19750651..19750675 (25 bp)
TACTATGGAGCCATGGAGGTGGACA
LOC_Os07g33080
OsAffx.16937.1.S1_at--104--471NONE
ATCTCTGATCACCAGGGTTTGTATG
NONE
OsAffx.16937.1.S1_at--318--6451NONE
GATCACCAGGGTTTGTATGTAATTA
NONE
OsAffx.16937.1.S1_at--694--5971Chr07:19749639..19749663 (25 bp)
GAGAACTTGTTAGCGACACCATTAG
LOC_Os07g33080
OsAffx.16937.1.S1_at--982--5631Chr07:19749625..19749649 (25 bp)
GACACCATTAGAATCGGAGCACTTG
LOC_Os07g33080
OsAffx.16937.1.S1_at--332--8071Chr07:19749610..19749634 (25 bp)
GGAGCACTTGTTTACGGAGTCCATG
LOC_Os07g33080
OsAffx.16937.1.S1_at--329--7271Chr07:19749592..19749616 (25 bp)
GTCCATGATGAGAGAACACTGCAAG
LOC_Os07g33080
OsAffx.16937.1.S1_at--521--8051Chr07:19749563..19749587 (25 bp)
GGAGAAAATCCCATACGTATCCTTT
LOC_Os07g33080
OsAffx.16937.1.S1_at--982--6891Chr07:19749547..19749571 (25 bp)
GTATCCTTTAGAGTTCGTCCAATCC
LOC_Os07g33080
OsAffx.16937.1.S1_at--596--10032Chr11:10873344..10873720 (25 bp)
TAGAGTTCGTCCAATCCCTTATGTA
NONE
OsAffx.16937.1.S1_at--1097--9392Chr11:10873343..10873362 (20 bp)
TCGTCCAATCCCTTATGTACTTTTG
NONE
Target Sequence 
TACTATGGAGCCATGGAGGTGGACAATGACTTCTTCCTGGTGCCTGTCAAGATCTCTGATCACCAGGGTTTGTATGTAAT
TAGAGAACTTGTTAGCGACACCATTAGAATCGGAGCACTTGTTTACGGAGTCCATGATGAGAGAACACTGCAAGAGAAGG
AGAAAATCCCATACGTATCCTTTAGAGTTCGTCCAATCCCTTATGTACTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis